Pestalotiopsis fici: PFICI_01212
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Entry
PFICI_01212 CDS
T04924
Name
(RefSeq) Pre-mRNA-processing ATP-dependent RNA helicase PRP5
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFICI_01212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfy03041
]
PFICI_01212
Enzymes [BR:
pfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFICI_01212
Spliceosome [BR:
pfy03041
]
Complex A
U2 snRNP components
U2 related factors
PFICI_01212
Complex B
PFICI_01212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
19266225
NCBI-ProteinID:
XP_007827984
UniProt:
W3XN21
LinkDB
All DBs
Position
Unknown
AA seq
1182 aa
AA seq
DB search
MARLRDSRSPSPAGSSRRYRRDDDRRRDRDRDRDRRRRSRTPPRPRDEYRRRDRSLDRSD
DYHRDGRDRRRSRDRYNDGGRDRDRDWDRDKGRRDRDDRRKRDDSRDRARSRREGTTDSH
RSGPTDSRARPAAEVCPPFRSKHANIHTSRSQSTDTKSKPNAPPAAAQSDADKKAERLAK
LAAWKKKQELEKEKAKEATPGATRKLLAEMDQKANGSSAATPSVASPTSAVASPAASTSF
PSPATPYSGKFDPKEIAKKSARVHESSAAPKLGSIGVQLPPSKPAAPVSGLPKASALPKA
KTSGFGFHKQNADTDKIPQKRKLILDEEEASDRKLAKLPSLPLADVDDTPYEVQDDDEED
ADNFAGDEEEEAAAARAAQERREERMAQENAQQNSTMDIDESKAEVDATTVSADAGGQAM
EVDEEEEVDALDAFMNDLESKPAPASKPAKLNGASQKKVEPEPEAFFSGDDDYDYAKNED
EPGAFLEKVNKARKKKDIPTVDYSKLDMAPLRKNFWVEPAELSEMTEAELTDLRLELDGI
KVSGKDVPKPVQKWSQCALSRRTLDIIDSLGFDKPTPIQMQAFPAIMSGRDIIGIAKTGS
GKTLAFLLPMFRHIKDQEPLRENDGPIGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAY
GGAPIKDHIAELKRGAEIVVCTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFE
PQVMKILNNMRPDRQNILFSATMPRIMDALAKKILKDPVEITVGGKSVVAPEITQIVEVR
EEDKKFIRLLELLGELYDKDEDARSLIFVERQEKADKLLKELLQKGYPCMSIHGGKDQVD
RDSTISDFKAGVVPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNKG
TAVTFVTGEQENSAYCIAKALEQSGQPVPEPITVMQKAFQEKLKAGKARDSSGFGGKGLD
KLDQEREAARLRERKSHRTEGDEEEENEEEKAKEDKKADKALSAIQAAASAVSSRDAAPA
KQPDLEPKFTIHKREDPPPNSGNNPLDKVSSARDAINARLGKSGQLRPGQPIDNKGPDAG
AFHATLEINDFPQKARWAVTNRTNVAKILEATGVSITTKGTFYPAGKEVPPGGEAKLYIL
VEGDTEVVVSTAMTELTRLLKQGTMAAADAESRQPMGRYNVI
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggctcggctcagggactcacgctcaccaagccctgcaggaagctcaagaagataccgt
cgcgatgatgacagacgacgtgaccgggaccgcgatcgggaccgccgccgccgctcgcgg
acgccgccacgcccccgcgatgagtatcgccgacgggatcgttccctagaccggagcgac
gattaccacagagatggacgagatcggagacgctcccgtgatcgctataatgatggcggt
agagacagggatcgggattgggacagagacaagggtcgtcgtgaccgtgatgacagacgc
aagagggacgactcccgcgaccgcgcgaggagtcgacgagaaggcaccaccgactctcat
cgctctggaccaaccgattctcgcgcgcggcccgctgcagaggtatgtccacccttccgc
tctaaacatgcaaatattcacacttctcgatctcagtctacagataccaagtcgaagcca
aacgccccgcctgctgcagcacagtcagatgccgacaagaaagccgaacgccttgccaaa
ctcgcagcatggaagaagaagcaggaactggagaaggaaaaggccaaggaggccactccg
ggagcgacgagaaaacttcttgctgagatggaccagaaggctaacggcagttctgctgcg
accccatcagtagcatctcctacatctgcggtagcatcgccagcagcgagcacctcgttt
ccgtcacccgcaactccgtattctggtaaattcgaccccaaggaaattgcgaagaagtcg
gctcgtgtacacgaatcaagtgctgcgcccaaattgggctcgatcggcgtacagctaccc
ccctcgaagccagctgctccagtcagtggattgcccaaggcatcagcgctaccgaaagcc
aaaaccagcggctttgggtttcacaagcagaatgcagataccgacaagatcccgcagaaa
cgaaaattgattcttgatgaggaggaggcatccgacagaaagctcgctaagctcccttct
ctacctcttgctgacgttgatgatactccatacgaagtacaagatgacgacgaggaggat
gctgataactttgcgggcgatgaggaggaggaagcggcggcagcacgagccgctcaagaa
cgccgcgaagagcgcatggctcaggaaaatgcccaacaaaatagcacgatggatattgat
gaatcgaaagcagaggttgatgcgactaccgtgtctgccgacgctggcggtcaagcaatg
gaggtagacgaagaggaggaagtagacgcgctggacgcattcatgaacgacttggagtcc
aagccagccccagcttcgaaacccgcgaaactcaatggcgcgagccagaaaaaggtcgag
ccagagccggaagcattttttagtggtgatgacgattatgattatgccaaaaacgaggat
gaaccaggcgcattcctggaaaaggtcaacaaggctcgcaagaagaaggatattcccact
gtcgactacagcaaacttgatatggcaccccttagaaagaatttctgggttgagccagct
gaattgtctgaaatgaccgaggcggaactgacggatttgagactcgaactcgatggcatc
aaggtgtctggcaaggacgtgcccaagccggtacagaaatggtcacagtgtgccttgtcg
cgacggacactggatatcattgacagtctcggcttcgacaagccaacacctatccagatg
caagccttcccggccatcatgtctggccgtgacatcattggtattgctaagactggctcg
ggcaaaaccctcgcctttctgttgccaatgtttcgacatatcaaggaccaagagccattg
agggagaacgatggtccaattgggctgatcatgactccgaccagagaacttgccacccaa
attcaccgtgattgcaagcctttcctcaaatcgatgggactgagggcggtctgtgcctat
ggcggtgcacccatcaaggatcatattgccgagctcaaacgaggtgctgagatcgtggta
tgcactccaggacgtatgatcgatctccttgccgcgaaccagggccgggtaacgaacttg
aagcgtgtcacgtatgtggtgcttgacgaagcagaccgcatgttcgacatgggatttgaa
ccacaagtcatgaaaatcctcaacaacatgcgaccggatcgtcagaacattttattctct
gctacaatgccccgaatcatggatgcgttggcgaagaagattctgaaagatcccgttgaa
atcaccgtgggcggcaagagtgttgtagctcccgaaatcacacaaattgtggaggtcagg
gaagaggacaagaagttcatcagattgcttgaattgttgggcgagctctatgacaaggac
gaggatgctcgaagtctgatctttgttgaacgccaggagaaggctgacaagctattgaaa
gagttactgcaaaagggatatccatgcatgtcaatccatggcggaaaggatcaggtcgat
cgggattctacgatttcagatttcaaagctggcgtcgtccccatcatgattgcaacctcg
gtcgccgctcgaggtcttgatgtcaagcagttgaaactggtcgtcaactatgacgcgccc
aaccacttggaggattacgtccaccgtgctggccgcactggtcgtgccggcaataaagga
actgctgtgacttttgtcactggcgaacaggagaacagtgcctattgcattgcaaaagcc
ctggagcagagtgggcagcccgtccccgaacccattacagtaatgcaaaaggccttccag
gagaagctgaaagccggcaaggcccgagactcgtctggatttggcggcaaaggtttggac
aagctggaccaggaacgagaggccgcacgactgcgagaacggaagagtcatcggaccgag
ggcgatgaggaggaagagaatgaggaggagaaggcaaaggaagacaagaaggctgacaag
gcactgtcagctattcaagcggcagcttctgcagtctcgtcgcgtgatgctgcgccagcc
aagcagcccgacttggagccaaagtttaccattcacaagcgagaagacccaccgccaaac
tcaggcaacaatcccttggacaaagtctcctcggctcgtgatgccatcaatgcccgtctt
ggtaaatctggacagcttcggcccggacagcccatcgataataaaggcccagacgccgga
gcctttcatgcgactcttgaaatcaacgactttccgcagaaggctcgttgggctgtcacg
aaccgcacaaacgttgccaagattcttgaagcaacgggcgtttccatcaccaccaagggt
accttctaccctgcaggcaaggaggtgccaccaggaggcgaggccaaactgtacatcttg
gtggagggtgatactgaagtcgttgtgtcgacagcaatgacggagctgactcgcttgttg
aagcaaggtacgatggccgctgcagatgctgaaagtcggcagccaatgggcagatataat
gtcatctag
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integrated database retrieval system
