KEGG   Pestalotiopsis fici: PFICI_14546Help
Entry
PFICI_14546       CDS       T04924                                 

Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
pfy  Pestalotiopsis fici
Pathway
pfy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pfy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PFICI_14546
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfy03400]
    PFICI_14546
Enzymes [BR:pfy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PFICI_14546
DNA repair and recombination proteins [BR:pfy03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     PFICI_14546
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 RNA_ligase DNA_ligase_A_C BRCT DNA_ligase_IV LIG3_BRCT mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 19279559
NCBI-ProteinID: XP_007841318
UniProt: W3WI38
LinkDB All DBs
Position
Unknown
AA seq 998 aa AA seqDB search
MSQRRAKERDAGAVEEEVRQYTFGGHTLEEFDENYPNRPKNHSRTLRFAELFQNLFNPLN
ENKKKPPGPAARRKQRGGRGPSQLSPHEQRRAIIERFMSRWRAEVGNDFYPAMRLILPNQ
DRDRGVYGLKESAIGKLLVRTLKIDKYSTDGQSLLQWKRPGQKASQTAGDFAGRCLEVIA
KRPMRSSPGDMRVAEVNEMLDKLSAASGEAEQLPIIEDFYQKMSPEELMWLIRIILKEMK
VGATERTFFDIWHPDAEALFNVSSSLRRVCWELYDRDVRLNDDDTGVTLMQIFQPQLAQY
QYFGSWKKMVDQLTRDKENNTIREDAEFWIEEKLDGERMQMHMMEDKTVPGGFRFGWWSR
KAKDYAYLYGTGLRDRDSALTQHLKNAFVPGVRSIILDGEMVTWDMQLDKIMAFGTLKSA
ANAGKRNPYDEVGARCLYRVFDIVYLNGQELTRYTLQDRRNALEKAVPGVHRRLELHDHL
VSTSAADIEPHLRQVVENRSEGLVIKNPLSVYSLNQRNDDWIKVKPEYIKEYGEAVDVVI
IGAYYGTGHRGGAHSSFLCGLRVTDDDIERGADPEKCFSFIRVGGGFALQDYREIANRTQ
GKWTDWNSKRPPSKYIELAGGERQWWKPDQWIRPKDSVVIAVKAASSVPSDQYAKQITLR
FPRFQKLRDDRDWDTALDWRQFEDLKTQIAVKQEEKEMNFERRRRNTKRIKKEMVIMGQE
ATPVEFGGPKTKLFQGLEFCVLSESVQPKKSKTQIEVLIKENGGRISQRAIPNADMILIG
DKKVLKVASLIKAGPVDIISPKWVLDCVAQSDASAGFLLPYEPRHLFHVSDEMKEQAQEN
LDDYGDSYARDIDVAELKALLQDMPKNEIIDEPFHSGAFVEQLEAHGHDIGNIKGHMFKR
VVAHFATADNVLDISVLKYKNWVRFGGGIIVDDLEDRSVTHVVVVAKDDDPRAERDLSAE
IRSVISKRTQIPRLVTRKWLEDCWTEGTMLDEERFSPQ
NT seq 2997 nt NT seq  +upstreamnt  +downstreamnt
atgagccaacgccgagccaaagagcgcgatgcaggcgccgtggaggaggaagtacgacaa
tatacctttggcggacacaccctcgaggaattcgatgaaaactatccaaataggccgaag
aatcactcgcggactttgagatttgcagaattattccagaacttgttcaacccattaaat
gagaacaaaaaaaagccacctgggccagcggctcgtcgcaaacaaagaggcggccgcggc
ccttcgcagctgtcgccacatgaacagcgccgtgccatcattgagaggttcatgtcaaga
tggcgcgcagaggttggaaatgacttttatcctgccatgcgactgattctacccaatcaa
gatcgtgatcggggcgtctacggcctcaaagaaagcgccattggcaaattgcttgtgcga
accctcaagattgacaagtattccaccgatggacaaagcctactccaatggaaacgaccg
ggccagaaagcgagtcagacggcaggtgactttgctggtcgctgtttggaggtgattgcc
aagcgtcccatgcgctcgagccccggggacatgcgcgtagcagaggtcaacgagatgctg
gacaagttatctgctgcctcgggcgaggctgagcagttaccaattattgaggacttttac
cagaaaatgagtccagaagagcttatgtggctcatccggatcatcctgaaggagatgaaa
gttggtgccacggaaaggacattcttcgacatatggcaccctgacgccgaagctctcttc
aacgtatcctctagtctccgacgtgtctgctgggagttgtatgatcgagacgtacgcctc
aatgatgatgacacgggcgttaccttgatgcagatcttccagcctcaattagcccagtat
caatattttggcagctggaaaaagatggtagatcagctaacgagagacaaggagaataac
acaatcagagaggatgccgagttctggattgaggagaagctcgatggagaacgcatgcag
atgcacatgatggaagacaaaactgtgcctggaggatttcgctttggctggtggtcccgc
aaagccaaggactatgcctatctttacggtaccggcttgcgtgatcgcgactcggcactt
acgcaacatctcaaaaacgcctttgtccctggagtccggagcatcattctagacggcgaa
atggttacgtgggatatgcaactagacaaaatcatggcctttggaactctcaagtccgcg
gcgaatgccggcaaacgaaacccgtacgatgaggttggggcacgttgtctatatcgtgtc
tttgacattgtttacttgaacggtcaggaattgaccaggtacactcttcaagaccgacgt
aacgcgctggagaaggccgtgcctggcgttcaccgaagacttgaactacacgatcatttg
gtgtcaacgtcagcggccgatattgaaccgcatctgcgacaagtagtcgagaatcgatcc
gaaggcctagtcatcaagaatccgctttctgtctacagcctgaatcagcgcaatgatgat
tggatcaaggtgaaacccgagtacatcaaggagtatggagaagccgtcgatgtagtcatt
attggcgcatattatggaactggacaccgtggtggcgcccactccagtttcttgtgtgga
cttcgggtcactgatgacgatattgaacgtggtgcagaccctgagaagtgcttcagcttt
atcagagttggtggtggcttcgctctacaagactaccgcgagattgcaaaccgaacacag
ggcaaatggacagactggaactcaaaaaggccaccgagcaaatacattgagctggctgga
ggtgagaggcaatggtggaaaccagaccaatggatccgacccaaagattcggtagtgatt
gctgtgaaagcagccagctctgttccctcggatcagtacgcgaaacagataacattaaga
tttccacgattccaaaagctccgtgatgaccgtgattgggatacagccctcgactggcga
caattcgaagatctcaagacgcagattgcagtcaaacaggaagagaaggagatgaatttt
gaacggcgaagacgaaacactaagcggatcaagaaggaaatggtcatcatgggtcaagaa
gcgacaccggtcgagtttggcggcccaaagaccaagctctttcaaggtctcgagttttgt
gtcttgtcagaatccgtgcagccaaagaagagcaagactcagattgaagtcctgatcaag
gagaatggtggcaggatatcccagcgagcgatcccaaatgccgacatgatattgattggt
gacaaaaaggtcctcaaggtggccagtttgatcaaggcaggcccggtcgacattattagt
ccaaagtgggttctcgactgcgtggcacagagtgatgccagcgcgggtttcctcctacca
tatgagcctaggcacttgtttcacgtttcggatgagatgaaggagcaagcccaagagaac
ctggacgactatggcgacagctatgcccgagacattgatgtcgcagagctcaaggccctc
ttgcaggatatgcccaagaatgaaatcattgatgaaccttttcattcgggcgcattcgtc
gagcagctcgaggcgcatggtcatgatataggaaacatcaagggccatatgttcaagaga
gtggtggcccactttgcaacagcggataatgttttggatatctctgttctcaagtacaag
aattgggttagattcggcggaggcatcattgttgacgatctcgaggaccgatccgtcact
cacgtcgtggtagtcgctaaagacgacgatccacgtgctgaacgagacctttccgcagag
attcgatccgtcataagcaaaagaactcagattccccggctggtaactcgaaaatggctg
gaggattgttggactgaaggcactatgttggacgaggaaagattctcgccgcaatga

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