Pseudomonas fragi: AV641_10230
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Entry
AV641_10230 CDS
T04285
Name
(GenBank) chromosome segregation protein SMC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pfz
Pseudomonas fragi
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfz03400
]
AV641_10230
DNA repair and recombination proteins [BR:
pfz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AV641_10230
Archaeal homologous recombinant proteins
AV641_10230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
RsgA_GTPase
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AMB79412
LinkDB
All DBs
Position
complement(2244774..2248415)
Genome browser
AA seq
1213 aa
AA seq
DB search
MKILAIRLKNLASLAGPFELDFTAEPLASAGLFAINGPTGAGKSTLLDALCLALFGAVPR
LSNTGRDAKVPDADGEVATGDPRTLLRRGTGEGYAEVDFVGIDGRRYRARWEANRAREKA
AGKLQASRQSLRDLDSDQLLASQKGDYKVQLEARLGLNFEQFTRAVMLAQSEFSAFLKAD
DNERSELLEKLTDTALYTRLGKRAFDKAKEARDNHKQLLDQAVGVTPLPPEARAELDQQY
DEARQQLKNRQSQLKQLEQQHSWLKTLRELQEQQHSAAEQLQQAQTLWQSQADQRQTLNL
LEQLAPQRHQFARLAELEAQLSPLAAHIAAHLQQQTALNQRQGQLQQALQTAQLEATQAQ
ARQRECAPRVQQAHLAQANLSRLTQALDAQQVLMQQAQQACDEGQQGLARMIEHQQQGAG
RIEHITRQLEQSAELTPLANAWDAYRPRLQQLVRLSNNLGTGNKELPALEQRAQLAAQQL
NELRNTLEILFQEAEAEPQAVNEQIQTLGSLLSDNHQQQRAFEDLQRLCSSQLALEARLQ
GLQLKLQTLQTEREQLIEQGTATKKQFESAEQALLVTQQLLERQRLARSASVEELRARLQ
DDQPCPVCGSHEHPYHQPEVLLQSLSRFDEEEEASARKVVDGLKETLIQLREKVGGVNAQ
HREFLQQHQHILDEQQALAPGLEAHPLYPQWLVQDPARREQWLTQRLGQLQHSINQDQQR
QNTLLALQKEAAQLQQQVQRSTEASQMAAQQLAEQRLHLQADKQRLGDELAEFAGLLPEA
TLAALHDNPSACFMALDQQVADRLAQLEQLRDEQSEQAQRASQIERAQYQQANITKELET
LQRSVLELTAQQQSGQQALHELLGDYSSAQLWQHSLEQAVEQARVAQTEAEQAVQTCANQ
LLQLTAELKAQQQHQHALQQEHSTLSAQVAQWRAQHSELDDSRLQQLLSIDEAQLRQLRL
QLQNSEKAVEQARVLLQERDQRLNQHQAQANGNLDAQALDSALNELHGLINTSEQQSAEL
RARQAEDQRRQEANQALAQRISQAYDEWQRWARLNALIGSATGDTFRKIAQAYNLDLLVH
HANAQLRQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVGVISHVQEMHERIPVQIQV
RRQGNGLSTVEVK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctggccattcgcctgaagaacctcgcctcgctggccggcccctttgagctg
gacttcaccgccgagcccctggccagtgccggactgtttgccataaacggccccaccggg
gccggcaaaagtaccttgctcgacgcattgtgcctggcactctttggtgccgttccgcgc
ctgagcaacaccgggcgcgatgccaaggtgccggatgccgatggcgaagtggccaccggc
gaccctcgtaccctgctgcgtcgcggcaccggtgaaggctatgccgaagtcgactttgtc
ggcatcgacggccgccgttaccgggcccgctgggaagccaaccgcgcccgggagaaagcc
gccggcaaactgcaggccagccgccaaagcctgcgcgacctcgacagcgaccaactgctg
gccagccagaaaggcgattacaaagtgcagctcgaagcgcgtctggggctcaacttcgag
cagttcacccgcgccgtgatgctggcccagagcgagttcagcgcctttctcaaagccgac
gacaacgagcgcagcgaactgctggaaaaacttaccgacaccgcgctctacacccgcctg
ggtaaacgggccttcgacaaggccaaagaagcccgggacaaccacaagcagttgctggac
caggccgttggtgtgacccccttgccccctgaagcccgcgccgaactggaccagcagtac
gacgaagcccggcaacagctgaaaaaccggcagagccagctcaaacagctggagcaacag
cacagctggcttaaaaccctgcgcgagctgcaagagcaacaacacagtgccgccgagcaa
ctgcaacaggcgcaaaccctgtggcagagccaggccgaccagcgccagaccctcaatctg
ctggagcaattggcaccgcaacgccatcaatttgcccgactggccgagcttgaggcacag
ctcagcccgctggccgcacacattgctgctcatctgcagcaacaaaccgcactcaaccag
cgccaggggcaactgcaacaagcgctacaaacagcgcaactggaggccacccaggctcag
gcccgacaacgcgagtgcgcaccccgggtgcagcaggcacatttggcccaggccaacctc
agtcgcctgacgcaagccctcgacgcccagcaagtcctcatgcagcaagcgcaacaagcc
tgtgacgagggccagcaagggctggcccggatgatcgagcaccagcaacaaggtgccggg
cgcattgagcacatcacccggcaactggagcaaagcgctgaactgacgccattggccaat
gcctgggacgcctatcgcccgcgcctgcagcaactggttcgcctgagcaacaacctcggc
accggtaataaagaactgcccgcccttgaacaacgggcgcagctggcggcgcaacaactc
aacgaattgcgcaacactctggaaatactgttccaggaggccgaagccgagccgcaggcc
gtcaatgagcaaatccagaccctgggcagcctgctctccgacaaccatcagcaacaacgc
gcgttcgaagacttgcagcgcctgtgcagcagccagcttgcactggaggcccgcttgcag
gggttacaactcaagctgcagaccctgcagaccgaacgcgaacagctgatcgaacaaggc
accgcgaccaagaaacaattcgagtcggccgagcaggccctgctggtcacccaacagcta
ctggaacgccagcgactggctcgcagcgccagcgttgaagaactgcgcgcccggctgcag
gatgaccagccgtgtccggtctgtggcagtcatgagcacccctatcaccagccagaagta
ctgttgcagagcctttcacgctttgacgaggaagaagaggccagcgcccgcaaggtggtc
gacggccttaaagaaaccttgattcagttgcgcgaaaaagtcggcggggtgaacgcccag
caccgcgagttcctccagcaacatcagcacatcctcgacgaacaacaggccctggctccc
ggccttgaggcgcatccgctgtatccgcaatggctggtacaagatccggccaggcgtgag
cagtggctgacccagcgcctgggccagttgcaacacagcatcaaccaggatcaacagcgc
cagaacaccctgctggccctgcaaaaagaagccgcacaattacagcagcaagtgcagcgc
agtaccgaggccagccagatggccgcgcaacagctggccgagcaacgcctgcacctgcaa
gccgacaagcagcgccttggcgatgagctggcggaattcgccggcctgttgcccgaggcg
actctcgcagcgctgcacgataatccgtcagcctgttttatggcgcttgaccagcaagtg
gccgatcgactggcgcaactcgagcaactgcgcgatgaacaatcggagcaggcgcaacgg
gcgagccaaatcgagcgggcgcagtatcagcaagccaatatcactaaagagctcgaaacc
ctgcaacgcagcgtgctcgaactgaccgcgcaacagcagtcgggccagcaggccctccat
gagctactgggcgattacagcagtgcgcaactatggcaacacagcctggaacaggcagtg
gaacaggcccgtgtggcccagaccgaggcagagcaggccgtgcagacctgcgccaaccag
ttgctgcaactgaccgccgagctcaaggcgcaacagcaacaccagcacgcactgcaacag
gaacacagcaccctcagtgctcaggttgcgcaatggcgcgcgcagcacagcgaactggat
gacagccgtttgcaacagttgctgagcattgacgaagcgcaactgcgtcagttgcgcctg
caactgcaaaacagcgagaaggccgtagagcaagcccgcgttctgttgcaggagcgcgac
caacgtctgaatcagcatcaggcccaggccaacggcaaccttgacgcccaggcactggac
agcgccctgaatgagctgcacggcctgatcaacaccagcgaacagcaatctgcggagtta
cgtgcccggcaagccgaagaccagcgccgccaggaggccaaccaggcactggcgcaacgc
atcagccaggcctatgacgaatggcagcgctgggcacggctcaatgccctgatcggttcc
gccaccggcgacaccttccgcaaaatcgcccaggcctacaacctcgatttgctggtgcac
cacgccaatgcacagctgcgccaactggtgcgccgctatcgcctcaaacgcggcggcagc
atgctcggcctgctggtaatggataccgaaatgggcgacgaactgcgttcagtccactcg
ttgtccggcggtgagaccttcctggtgtcactggctctggccctgggtctggcgtcaatg
gcgtccagcacgctgaaaatcgaatcactgtttatcgacgaaggcttcggcagtctcgat
cccgagtcgctgcaactggcaatggatgccctcgatggactgcaggcccagggccgcaaa
gtcggagtgatttcccatgtccaggaaatgcacgagcgcatccccgtgcaaattcaagtg
cgccgtcaaggcaacggcctgagcaccgtggaggtcaaatga
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