KEGG   Pseudomyrmex gracilis: 109858202Help
Entry
109858202         CDS       T05003                                 

Definition
(RefSeq) histone deacetylase 6 isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
pgc  Pseudomyrmex gracilis
Brite
KEGG Orthology (KO) [BR:pgc00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatase and associated proteins [BR:pgc01009]
    109858202
  09182 Protein families: genetic information processing
   03019 Messenger RNA Biogenesis [BR:pgc03019]
    109858202
   04131 Membrane trafficking [BR:pgc04131]
    109858202
   03036 Chromosome and associated proteins [BR:pgc03036]
    109858202
Enzymes [BR:pgc01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     109858202
Protein phosphatases and associated proteins [BR:pgc01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     109858202
Messenger RNA biogenesis [BR:pgc03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     109858202
Membrane trafficking [BR:pgc04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    109858202
Chromosome and associated proteins [BR:pgc03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     109858202
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP BPTA
Motif
Other DBs
NCBI-GeneID: 109858202
NCBI-ProteinID: XP_020290830
LinkDB All DBs
Position
Unknown
AA seq 1166 aa AA seqDB search
MTESIVKSDLFSAAKQLVESEIDLIKIIESSKKCKKSDTNTLVDMKKTKKSGKSTKVRPW
LLAAKQEAAQRKLLDKKSNNSFVRDIYQRAIDAYTMVRKKTGLVFDRNMAEHECLWDQNY
PECPARFTQVLQRCEELGLVKRCKIIESRSATESEILTKHTQKQIDILKATHGCVDIENL
ELLSSRYDAIFIHPSTYKLSLLAAGSTINLVESICKGDVQNGMAIVRPPGHHAMKSEYCG
YCFFNNVALAAEKVLCSNLASRILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEHGEFW
PNLRESDFHYVGEDLGEGYNFNIPLNKTGMTNADYVAIFQQVLLPMAYEFQPDLVIVSAG
YDAALGCPEGEMLVTPACYAHLLSSLLSLAAGRVAVILEGGYCLKSLAEGAALTLRTLLG
DPCPILQSLELPSSSIRDTILNVIYAHKPYWKCYQYQDTYSINSITHDKEEITNRHVVRV
TYKSNEIKLDKYETRNCYPVKTKEAADIIEKQLNELIQFTNLYKAPHKVCVVYDERMHKH
CDISDNSHPEKPSRIAGIYKNHEENGLLDRCYMLQGKSATIEELCLAHSKQHVDSIKRTS
GLKLKELQKQASDYNSVYLNNETWSSACVSAGSLLQVVNAVLSGKSQSGVAIVRPPGHHA
EEDIACGFCIFNNVAVAARYAIQFYHLKRVLIVDWDVHHGNGTQSIFEEDPKVLYMSVHR
YDNGSFFPNSKSANYTSVGLKAGEGFNVNIPWNKKGMGDAEYIAAFQQVVMPIAYQFNPE
LVLISAGFDACVGDPLGGCLVSPEIYAHLTHWLSSLANGRIILSLEGGYNINSISHAMTM
CTKALLGDPLPMLDPGLIPCTSAINSINNVLKTHKRFWPNLQYCMSLPKERANFLRPSLL
QTVSSKFENSFMPKQTESKIALEGIESEKLDLNLAIDKNYLSQVTDEEILKLTNEVENIK
IKNLDLNSKTNETRKKPKQTTEAKSVEVSQAIQQCVKETKQSQNQQENSGVSEDNEDNAA
ALPRDTRDMTLQEYLSDNIQALTAGEMFAVIPLLDCPHVDTVNDVPPNGIDVASPCAECG
STAENWICLQCYTVHCARYVNQHAMQHAEEHEHPIALSFTDISVWCYGCESYINHPRLYP
ARNAAYQSKFNEELVWTYGESNTNIS
NT seq 3501 nt NT seq  +upstreamnt  +downstreamnt
atgactgaatctatagtaaaatcagatttgtttagtgctgccaaacagttggtggaaagt
gaaattgatctgataaagataattgagagctctaaaaagtgcaaaaaatctgatacaaat
acacttgtagatatgaaaaaaacaaagaagtctggaaaatcaacgaaagttcgcccttgg
ctgttggctgccaagcaagaagcggcacagcgtaagctattggataaaaaatccaacaac
agttttgtacgagatatatatcagagagcgattgatgcttacacaatggtgcgaaagaag
acgggtcttgtgttcgaccgaaacatggcggagcacgaatgtctctgggatcaaaattat
cccgaatgcccagccagatttacacaggtgttgcaaagatgcgaagaattgggtttggtg
aaaagatgcaagattatcgagtcgagatcggctacggagagtgaaattttgacgaagcat
actcaaaagcaaattgatatcctcaaggcaacgcacggttgtgtagatattgaaaacttg
gaattgttgtcttctagatacgacgctatttttattcatccatctacgtataaattgtct
ttgttagctgctggctcaacgatcaatttggttgaaagtatttgtaaaggcgatgtgcaa
aatggcatggctattgtcagaccaccaggtcatcatgcaatgaaatcagaatactgtggt
tattgtttttttaacaacgtagcacttgcggcagaaaaggttctttgttcgaatctggcg
agtagaattttaattgtggattgggacgttcatcacggacaggcaacgcaacaaatgttt
tacaacgacccacgtgtggtttacttttcgatacatcgctacgagcacggtgagttctgg
cccaatctgagagaatctgattttcattacgtcggtgaggatctgggagagggttacaat
ttcaatatacccttgaataaaaccggcatgaccaatgccgattacgttgcgattttccaa
caagttttattgccgatggcttacgaatttcaaccggatctggtaatagtgtcagctggt
tacgacgcagctctgggttgtccagagggtgaaatgcttgtaactccagcgtgttatgca
catttgttatcatcgttgttgagtttggcagccggaagagtcgctgtaattttggagggt
ggttattgcttgaaatctttagcggagggtgcagctttgactttgagaactttgttgggc
gatccatgtcccatcttgcaaagtctagaattgccatcgtcaagcatacgcgatactatt
ctgaacgtaatttacgcgcacaaaccatattggaaatgttatcagtatcaagacacgtac
agcatcaacagcataacgcatgacaaagaagagattactaatcgacatgtggtcagggtt
acgtacaagagcaatgagatcaaactcgacaagtacgaaacacgaaattgttatcccgta
aaaaccaaagaagctgcggatatcatcgagaaacagttgaacgaattgatacaatttacg
aatttgtacaaagcacctcacaaagtgtgtgttgtttatgacgaacgaatgcacaagcat
tgcgacatatccgacaatagtcatccagagaaaccgtcccgtattgctggtatttataag
aatcatgaggaaaatggtttgctagatcgatgttacatgctacaaggaaaaagtgcgaca
atagaagagttatgtttggctcattccaagcaacatgttgacagtatcaaaaggacatct
ggtttgaaactcaaagaattacaaaaacaagcttccgattataattctgtttatctgaac
aacgagacgtggtcgagcgcttgcgtgtccgctggttctctattgcaagtggtgaacgcg
gttttaagcgggaaaagtcaatctggcgtggcaatcgttagaccaccgggacaccacgcc
gaagaggatatcgcgtgtggattttgtattttcaataacgtcgcggttgccgcaagatac
gctatacaattttatcacttaaagagggtgttgatagtagattgggacgtgcatcacgga
aacggaacgcagtcaattttcgaggaagatcccaaagttctttacatgtctgtacatcgt
tacgataacggaagctttttcccaaattcaaagtctgctaactacacgagcgttggttta
aaagcgggtgagggatttaatgtaaacataccctggaacaagaaaggaatgggagatgct
gaatatatagcggcttttcaacaagttgtgatgcccattgcttatcagtttaatccggaa
ttggttctgatttctgccggattcgatgcttgcgtgggcgatccactcggaggttgtctc
gtaagcccagagatctatgctcatttgactcactggctctcgtctctggccaatggccgt
ataattctcagcctcgaaggaggctacaatatcaattcaatctcgcacgcgatgaccatg
tgtaccaaagctcttctgggcgatcccttgccgatgctggatcccggtctgattccctgc
accagcgcgataaattccatcaacaatgttctgaagactcacaaaagattttggccaaat
ttgcaatactgcatgtcgttgccaaaagagagagccaacttcctaagaccgtcgttgctt
cagaccgtctcttcgaaattcgagaactctttcatgccgaagcaaacggaatcgaagatt
gcgttggagggaatagaaagtgagaaattggatttgaacttggcgatcgataaaaattac
ttgagtcaggtgacggacgaggaaatattgaaattgacgaacgaagtggagaatataaaa
attaagaacctcgacttgaacagcaaaacaaacgagacgagaaaaaaaccaaaacaaaca
actgaagcaaaaagtgtagaagtttcacaagctatacaacaatgtgtgaaggaaacaaag
cagtcgcaaaatcaacaagaaaattctggagtgtctgaagataacgaagataacgcggca
gccttacctcgtgatacgcgagatatgactctgcaagaatacctgtccgataacattcag
gctctaacggcgggagagatgttcgcggtaatacctttgcttgattgtccgcacgtggac
acagtcaacgacgttcctccaaatggaatcgacgttgcttcaccttgcgcggagtgcggc
agcaccgcagaaaattggatatgtctgcagtgttacactgtacattgtgctcgttatgtt
aatcagcacgcgatgcaacatgcggaggaacacgagcatccgatagcgctcagtttcacc
gacatatccgtctggtgctatggttgtgaatcctacattaatcatccccgcttatatccg
gcaagaaatgcggcttatcaaagcaaattcaatgaagaacttgtctggacttatggcgaa
agcaatacaaacatatcttag

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