Panacibacter ginsenosidivorans: FRZ67_08505
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Entry
FRZ67_08505 CDS
T06131
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pgin
Panacibacter ginsenosidivorans
Pathway
pgin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRZ67_08505 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgin03019
]
FRZ67_08505 (rnr)
03016 Transfer RNA biogenesis [BR:
pgin03016
]
FRZ67_08505 (rnr)
Enzymes [BR:
pgin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FRZ67_08505 (rnr)
Messenger RNA biogenesis [BR:
pgin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FRZ67_08505 (rnr)
Transfer RNA biogenesis [BR:
pgin03016
]
Prokaryotic type
tRNA degradation factors
FRZ67_08505 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QEC67334
UniProt:
A0A5B8V7D5
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All DBs
Position
2055623..2057662
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AA seq
679 aa
AA seq
DB search
MAKKNKNKHNKGHDAQALKGNLEITRSGIGYVVISDGTGDVLVRPGSFNNALHGDTVRVK
VTKMNPLNGRREGRITEIVSRKQTEFVGTLQLATNYAFFVADSDKPMPDIFIPLQNVHGA
KNKDKVVVRMLQWESADKNPVGEVVSVMKPEDANDMAMKEILTEGGFPLSFSDDVLEESE
RLPDIISKSEIDKRKDFRDVLTFTIDPVDAKDFDDALSIRILNSGLYEIGVHIADVSHYV
EPETKLDEEAYKRATSVYLPDRVNPMLPERISNELCSLRPNEDKLTFSAVFQMDVHGKVK
NHWIGRTAIHSDHRFTYEDVQEIIEKGEGKFSEEIILLNRIARSLRKVRFDKGAINFSSQ
EVRFKLDEKGKPIGIVIKESKEAHQLIEEFMLLANRTVAEYIGKIKVNKKPVPFPYRVHD
TPDEQKLLPFIEFAKKYGHKFDISSPERIAESFNAMLADVNGKPEQHVLEQLGIRTMAKA
SYNTENIGHYGLGFEDYCHFTSPIRRYPDVLVHRVLESCLQGRPIIDKKMDEKCKHTSER
ERAAMDCERASNKYKQVEFLKDHLGEVFEGVVSGVSSFGFWVETVAHKCEGLVNITSLSD
YDDFRHIESDYALVGRRSGRAFRMGDKVFIRVVAANLDKRQLDYEWVLKPDEESEVKTEK
SRVKKEKSKGTVRKPKKEK
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaaaaataagaacaaacacaacaaaggtcatgatgcacaggcattgaaaggc
aatttagagataacacgttccggaattggatacgtggtaataagtgacggaaccggcgat
gtgctggtaagaccgggaagttttaataatgcgctgcatggagatactgtgcgtgtaaaa
gttaccaaaatgaatccgctgaatggcaggcgggaagggcgcattacggaaattgtgtcg
cgtaagcaaacagaatttgtgggcaccttacaacttgctaccaactatgcattttttgtt
gcagacagtgataaaccaatgcctgatatttttattccgctgcaaaatgtgcatggtgca
aaaaataaagacaaggttgtggtgcgcatgctgcaatgggaaagtgcagataaaaatcct
gtgggcgaagttgtgagtgtgatgaagcctgaagatgcgaatgacatggcgatgaaagaa
attcttacagaaggcggattccctttgtcgtttagtgatgatgtgctggaagaaagtgaa
cgtttacctgatataataagtaagagtgagatcgataaacgaaaagattttcgtgatgta
ttgacttttacaatagacccggttgatgcaaaagattttgatgatgcattatctatccgc
atattgaattctggtttgtacgagataggtgttcacattgcagatgttagtcattatgta
gagcccgaaacaaaacttgatgaagaagcttataaacgtgcaacatcagtgtatttgcct
gatcgtgtaaaccccatgttgccggaaaggatttcgaatgaattatgttcattaagacca
aatgaagacaagcttactttctctgccgtttttcaaatggatgtacatggcaaagtaaaa
aatcactggatcggcagaacagcgatacattcagatcatcgtttcacatacgaagatgta
caggaaataattgaaaaaggagaaggtaaattcagtgaagagattattttactcaaccgc
attgcacgcagcctgcgaaaggtaagatttgataaaggcgctattaatttttcttcacag
gaagtgcgttttaagttagatgaaaaaggaaaacccattggcattgtaattaaagaaagt
aaagaagcgcatcaattgattgaagagtttatgttgctggcaaacagaacggttgcagaa
tatattggtaaaataaaagtaaacaagaagcctgttcctttcccctaccgtgtacatgat
acaccagatgaacaaaagcttttaccgtttattgagtttgcaaaaaagtacggtcacaag
tttgatataagctctcctgaacgcattgcagaaagcttcaacgctatgcttgcagatgta
aacggaaagcctgagcagcatgtgcttgaacagcttggcatacgtaccatggcaaaggct
tcttataacacggagaatatcggtcattacggtttaggctttgaagattattgtcatttt
acatcacctatccgccgttatcccgatgtgctggtgcatcgcgtactggaatcatgttta
cagggcaggcccatcatcgacaaaaagatggatgagaaatgcaagcacaccagcgaacgt
gaacgtgctgcaatggattgcgaacgcgcctctaataaatacaaacaggttgagtttttg
aaagatcatcttggtgaagtgtttgaaggcgttgtaagtggtgtttcatctttcggtttt
tgggtggagactgttgcacacaaatgcgaaggtctggtgaacataacaagccttagcgat
tatgatgacttccgccacatagaaagcgattatgcgttggtgggcagaagaagtggcaga
gcattccgcatgggtgataaagtttttattcgcgtggttgcagccaatcttgataaacga
caactcgattatgaatgggtgctgaaacctgatgaagaaagcgaagtgaaaactgaaaaa
tcaagagtcaaaaaagagaagagcaaaggaacggttaggaagcccaagaaagagaaatag
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