Phaeobacter inhibens 2.10: PGA2_c29470
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Entry
PGA2_c29470 CDS
T02193
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pgl
Phaeobacter inhibens 2.10
Pathway
pgl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PGA2_c29470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgl03021
]
PGA2_c29470 (rpoB)
03400 DNA repair and recombination proteins [BR:
pgl03400
]
PGA2_c29470 (rpoB)
Enzymes [BR:
pgl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PGA2_c29470 (rpoB)
Transcription machinery [BR:
pgl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PGA2_c29470 (rpoB)
DNA repair and recombination proteins [BR:
pgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PGA2_c29470 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AFO88918
UniProt:
A0AA86D9C5
LinkDB
All DBs
Position
complement(3216890..3221026)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQSFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDAEQPLDGEGIMGVFQSV
FPIKDFNETSVLEFVKYSFERPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVYMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVNFKLEK
SRGWVTPFFPERVRGTRPTYDLVDAATGEIFAEAGKKVTPRAVKKMIDEGNITDLLVPFE
HIVGKFVAKDIINEENGAIYVEAGDELTLEYDKGGELIGGTVKELIDAGITDIPVLDIDN
INVGPYMRNTMAQDKNMGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV
GRVKMNMRLALDAEDTQRTLRKEDIISCIKALVELRDGKGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVNDAKVTDEVHYMSATEEMRHTVAQANATLDEDGKFINDLVSTRQSG
DYTLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV
GTGIEEIVARDSGAAIMAKRGGIIDQIDAQRIVIRATSDLEMGDAGVDIYRMRKFQRSNQ
NTCINQRPLVKVGQEVRKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDEMGILDRNIYARLRGMLLGKTAVKGPKGIRAGSEITEEL
LDTLSRGQWWMLALEDEQSAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGIKIDDALQDYRRSGDLTPVREAMHHAYGDDVYGEGIADMTETD
LVEAAGNVTRGVPIATPVFDGAKEADVNDSLVRAGFDTSGQSILFDGRTGEQFARPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEGEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcgttccttggccagaaacgtcttcgcaaatactacggtaaaatccgcgaa
gtcctggacatgccgaacctcatcgaggtccagaaatcttcttacgacctcttcctgcgc
tctggtgatgcagaacagccgctcgacggcgaaggcatcatgggcgtgttccagtcggta
ttcccgatcaaggactttaatgagacgtcggttctggagttcgtgaaatattccttcgag
cgtccgaagtacgacgtcgaggaatgtatgcaacgcgacatgacctattcagctccgctg
aaggtcacattgcgtctgatcgtctttgatgtcgacgaagataccggcgcgaagtcggtg
aaggacatcaaggaacaggacgtctacatgggcgatatgcccctgatgacgccgaacggc
acctttgtggtcaacggcaccgagcgtgtgatcgtgtcccagatgcaccgttcgccgggc
gtgttctttgatcacgacaaaggcaagacgcattcttcgggtaaactgctgtttgcctgc
cgcatcatcccgtatcgcggttcctggctcgacttcgaatttgacgccaaggacatcgtt
tttgcgcgcatcgaccgtcgccgcaaactgcctgtaacgaccttgctttatgcgctgggt
ctggatcaggaaggcatcatggatgcctattacaacaccgtgaacttcaagcttgagaag
agccgtggctgggtcacgccgttcttccccgagcgtgtgcgcggtacccgtccgacctat
gatctggtcgacgcggccaccggtgagatctttgccgaagcgggcaagaaggtcacgccg
cgcgccgttaagaagatgatcgacgaaggcaacatcaccgacctgctggtgcccttcgag
catattgttggcaagtttgtcgccaaggacatcatcaacgaagagaacggcgccatctac
gtcgaggccggcgatgagctgactctcgagtacgacaagggcggcgagctgattggcggg
accgtcaaggaactgatcgatgccggtatcaccgacatcccggttctggacatcgacaac
atcaacgtcggtccctatatgcgcaacactatggcgcaggataaaaacatgggccgggac
accgcgctcatggatatctaccgcgtcatgcgcccaggtgagccgccaaccgtcgaggca
gcctccgcgctgtttgacacgttgttcttcgactctgagcgctatgatctctccgccgtt
ggtcgtgtgaagatgaatatgcgccttgctctggatgctgaggacactcagcggaccctg
cgcaaggaagacatcatctcctgcatcaaagcgctggttgagctgcgtgacggcaagggc
gacatcgacgacatcgaccacctcggcaaccgtcgtgtgcgctccgttggcgaactgatg
gaaaaccagtaccgcgttggcctgctgcgcatggaacgtgcgatcaaggaacggatgtcc
tccgtcgagatcgacaccgtcatgccgcaggatctgatcaacgcgaaaccggctgctgcg
gctgtccgtgaattcttcggctcctcgcagctgtcgcagttcatggaccagaccaacccg
ctctccgaagtgacgcacaagcgtcgcctatcggcgcttgggcctggcggtctgacccgt
gagcgtgctggctttgaggtgcgtgacgttcacccgacccactatggtcggatgtgcccg
attgagacaccggaaggcccgaacattggtctgatcaactcgctggcgacctttgcccgc
gtgaacaagtacggcttcatcgaaacaccctaccgtgtcgtcaatgacgccaaggtgacc
gacgaagttcactacatgtccgcgaccgaggaaatgcgtcacaccgtggcgcaggcgaac
gcgacactggacgaagatggcaagttcatcaacgatctggtctcgacacgtcagtctggc
gactacaccctggcgccgcgcgaaagcgtggacctgatcgacgtttcgccaaaacagttg
gtatcggttgcggcctcgttgatcccgttccttgagaacgacgatgctaaccgggctctg
atgggctcgaacatgcaacgtcaggcggttccgctgctgcgcgcagaggcaccgctggtc
ggtaccggtatcgaagagatcgtggcacgggattccggcgcggccatcatggccaagcgc
ggtggtatcatcgaccagatcgacgcacagcgtatcgtgatccgggcgacgtccgatctc
gaaatgggcgacgcgggtgtggacatctaccgcatgcgcaagttccagcgttcgaaccag
aacacctgcatcaaccagcgtccgctggtgaaagtaggccaggaagttcgcaagggcgaa
gtgattgctgatggtccgtccaccgacatgggtgaactggctctcggtaaaaacgtcgtc
gtggccttcatgccttggaatggctacaactacgaagactccatcctgatctccgagcgc
atcgcgcgtgacgacgtctttacctcgatccacatcgaggaattcgaagtcgccgcccgt
gataccaagcttgggccggaagagatcacccgcgacattccgaacgttggtgaagaagcg
ctgcgtaacctcgacgaggctggcatcgtttacatcggtgcggatgtggaaccgggcgac
attctggtcggcaagatcacacccaagggcgaaagcccgatgaccccggaagaaaagctg
ctgcgcgccatcttcggcgaaaaagcatctgacgtgcgcgacacctcgctgcgcgtgaag
ccgggcgactacgggaccgtggtcgaagtgcgtgtcttcaaccgtcacggcgtcgaaaaa
gacgaacgtgcgttgcagatcgagcgtgaagaagtcgagcgtctggctcgtgaccgggat
gacgagatgggcattctggatcgcaacatctatgcacgcctgcgtggcatgctgttgggt
aaaaccgcagtcaagggccccaaaggtattcgcgccggttcggaaatcactgaagagctg
ctggacacactcagccgtggtcagtggtggatgttggcgcttgaagacgagcagagcgca
caggtcgtcgaggccctgaacgagcagtacgaggcacaaaagcgtgccctggatgcccgt
tttgaggacaaggtcgagaaagtgcgtcgcggcgatgatctgccgccgggtgtgatgaag
atggtcaaagtcttcatcgcggtgaagcgcaagcttcagccgggtgacaagatggcaggc
cgtcacgggaacaaaggtgtgatctcgaaagtggtgccgatggaggacatgccgttcctc
gcagatggtactccggtcgatttctgtctgaacccgctcggcgttccttcgcggatgaac
gttggtcagattctggagacccacatgggttgggccgcacgcggtctgggcatcaagatt
gatgatgcgcttcaggactatcgtcgctccggcgatctgaccccggttcgtgaagcgatg
catcacgcctatggtgacgacgtctacggtgaaggtattgccgatatgaccgagaccgat
ctggtcgaggccgccggcaatgtgacccgtggtgtgccgatcgcaacaccagtctttgat
ggcgccaaagaggccgacgtcaacgactctctggtgcgcgctggctttgacacctctggt
cagtcgatcctgtttgatggccgcaccggcgagcagtttgcccgccctgtgaccgtcggc
atcaagtatctgctgaaactgcaccacctggtggacgacaagatccacgcgcgttcgacc
ggtccgtactccctcgttacccagcagccgctgggtggtaaggcacagttcggtggtcag
cgctttggtgagatggaagtctgggctctggaagcttatggcgccgcctacaccctgcag
gagatgctcaccgtgaaatcggatgacgttgcaggccggaccaaggtctatgaatcgatc
gtcaagggcgaggacaactttgaagcgggcgtaccggaatcgtttaacgttctggtgaaa
gaagtccgtggcctcggcctgaatatggaactcctggatgcagagggtgaggagtaa
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