KEGG   Paenibacillus graminis: PGRAT_05835Help
Entry
PGRAT_05835       CDS       T03325                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pgm  Paenibacillus graminis
Pathway
pgm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pgm00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    PGRAT_05835
Enzymes [BR:pgm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PGRAT_05835
DNA repair and recombination proteins [BR:pgm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PGRAT_05835
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AIQ67210
UniProt: A0A089M496
LinkDB All DBs
Position
complement(1319251..1320198)
Genome map
AA seq 315 aa AA seqDB search
MKLQPVVPFEPVLASQLPEGDQWIAQIKWDGVRMLSYCDGNDAELINRRGNRRTLQYPEI
ADPRAYCRAGSVILDGEVIALSGGKPSFHEVMRRDSLKNAAAIKSVSPQVPVLYMIFDIL
YCNGTWLLDQPLSRRQQMLGEMLLPHPHVQNVPSYARPSELFTAAQSGGLEGIVCKDING
TYAPGGKDSRWQKRKIVFDVNAVAGGVTYRDGLVNALLFGLFDSKGQLHYIGHAGAGRMT
AQDWRTITAQAQQLRTGDMPFTAVPQRSKGAVWIKPQLVFKLHYLEWNSSGTLRHPVIQA
QLDHPPLSCRIEQKG
NT seq 948 nt NT seq  +upstreamnt  +downstreamnt
atgaagctgcagcccgttgttcccttcgagcctgtgctggcatcacagctgccggagggc
gatcagtggattgcccagattaaatgggatggcgtgcgcatgctctcgtactgtgacggg
aatgacgcagaactgattaaccgccgcggcaaccggcgcaccctgcagtatcccgaaatc
gccgaccccagagcctactgccgggccggctcggtcattttggacggggaagtgattgca
ctcagcggcggcaaaccctccttccatgaagtgatgcgccgggacagcctgaagaatgcc
gcggcgatcaagtccgtaagtccgcaggttcctgtgctgtatatgatatttgacatccta
tactgtaatggcacatggcttctggaccagccgctgtccaggcgccagcaaatgttaggc
gaaatgctgctccctcatccccatgttcagaacgtgccaagctacgcccgtccctccgaa
ctgttcaccgctgcgcagagcggcgggctggaagggattgtgtgcaaggatatcaacggc
acttatgcaccgggcggcaaagacagccgctggcagaagcgcaagatcgtttttgatgtt
aatgctgtggccggcggtgtgacttaccgcgatggacttgtaaatgcgctgctcttcggc
ctctttgacagcaaaggccagctgcattatatcggacatgccggagcagggcggatgacg
gcacaggattggcggactataacagcacaggcgcagcagctcagaaccggggatatgcct
tttacggcagtaccgcagcgcagcaagggggctgtctggatcaaaccccagctcgtattc
aagctgcattatctggagtggaacagctctggaaccctgcggcatccggtcatccaggcc
caattggatcatccccctctgtcgtgccggatagagcagaagggctga

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