KEGG   Paraburkholderia graminis: CUJ91_08255Help
Entry
CUJ91_08255       CDS       T05548                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pgp  Paraburkholderia graminis
Pathway
pgp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pgp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CUJ91_08255 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pgp03400]
    CUJ91_08255 (ligD)
Enzymes [BR:pgp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CUJ91_08255 (ligD)
DNA repair and recombination proteins [BR:pgp03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CUJ91_08255 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AXF07919
UniProt: A0A2Z5LS93
LinkDB All DBs
Position
PHS1_A:1846520..1849342
Genome map
AA seq 940 aa AA seqDB search
MNDRLDLYNRKRRFDETPEPAGTAAKKRGSRGATRPTVEQGLSYVIQEHHARRLHYDFRL
ELNGALLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGTFEGEIPPGNYGAGTVIVWDRGTW
EPVGGPAEAARAYRAGKLKFHLHGDKLHGGWTLVRSHMRGDADKEQWLLIKERDDEARDE
SEYDILAERPGSVLSGAGTPAGKAKAGKQSDKQAIKQSAGKTRTASVRGDPKRPDIVATR
SSESLRELAASPAIEGAVKAKLPASLKPQLATLVDATPPGDDWTYEIKFDGYRVLARIDA
SEKTRGVQVFTRAGNDWTAKFSKQVKAFAQLGLDSAWLDGEAVVLDENGVPSFQALQNAF
DSNRPQDIVVYLFDVPFLNGYDLRGVPLQQRRAILRALLEPVDDSVLRFSNDFEFSADDL
LKSACDMALEGIIGKRRDSGYVSGRSATWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLL
GVHDSKGKLQYAGRVGTGFDAALLRSVKKELDAHETKRMPFASTPRERSRTPVHWVEPVL
VAECNFAEWTSDGIVRQASFVSLRKDKPARQIVKEAPRKGDDVQQQTDIEAEVAPKKRAA
RGEANKTAAKSASKVATKTASKVATKSATQNSAEPTAPRAKKSSPAEVAGVRISHPDRVI
DKSTGARKIDLVQYYESVAQWMLPHLVDRPVSLVRAPEDIGGELFFQKHTQKLSIPNITQ
HPGLDPGHPPLITVDSAKALVGAAQMGTIEFHTWNGVASNIEKPDRVVFDLDPDPSLGWD
RMIEAAMLTRSLLEELGLTSFCKTSGGKGLHVVVPLSKHAGWDEVKEFSQAVAQHMASTL
PKYFSAKMGAQNRKQKIFVDYLRNNRGSSTVAAFSVRARPGLGVSVPLAWDEVAQTTGGD
QWNIENLHERLDELKGDPWADYAKTRQRITAAMRKRLSGA
NT seq 2823 nt NT seq  +upstreamnt  +downstreamnt
atgaacgacagactcgacctctataaccgcaagcgccgcttcgacgaaacgccggagccc
gcgggcaccgccgcgaaaaagcgcggcagccgcggcgccaccaggccgacagtcgaacag
ggcctgtcctacgtgatccaggaacaccacgcacggcgtctgcactatgacttccggctc
gaactgaacggcgcgctgctgtcgtgggccgtgccgaaagggccgagcctcgatccgtcg
gtgaagcgcctcgccgtgcatgtcgaagaccatccggtcgaatacgggacattcgaaggc
gagattccgccgggcaattacggcgcgggcacggtcatcgtatgggaccgcggcacatgg
gaacctgtcggcggcccggccgaagcggcgcgtgcgtatcgcgcaggcaagctcaagttc
catctgcacggcgacaagctgcacggcggctggacgctcgtgcgcagccacatgcgcggc
gacgcggacaaggaacagtggctcctcatcaaggaacgcgacgacgaggcgcgcgacgaa
agcgaatacgacattctggccgaacggcccggcagcgtgctgagcggcgcggggacgcct
gcggggaaggcaaaagccggcaagcagagcgataagcaggccatcaagcagagcgccggc
aaaaccagaaccgcctcggtgcgcggcgatccgaagcgccccgacatcgtcgcgacgcgc
agcagcgagtcgctgcgcgaactcgccgcatcgcccgcgatagaaggcgcggtgaaggcc
aaactgcctgcctcgctgaagcctcaactggcgacgctcgtcgacgcgacgccgcccggc
gacgactggacatacgaaatcaagttcgacggctatcgcgtgctggcccgcatcgacgca
agcgagaaaacccgcggcgtgcaggtcttcacgcgcgcgggcaacgactggaccgcgaaa
ttcagcaagcaggtgaaggcgttcgcgcaactgggcctcgacagcgcgtggctcgacggc
gaagccgtggtgctcgacgaaaacggcgtgccgagtttccaggcgctgcaaaacgcgttc
gattcgaaccgtccgcaagacatcgtcgtctatctgttcgacgtgccgtttctcaacggt
tacgacttgcgcggcgtgccgctgcaacagcgccgcgcgattctgcgcgcgctgctggag
cccgtcgacgacagcgtgctgcgtttttcgaacgacttcgagttcagcgccgacgatctg
ctgaaaagcgcgtgcgacatggcgctcgagggcatcatcggcaagcggcgcgacagcggc
tatgtgtccggccgctctgccacgtggatcaagctgaagtgccgtcggcggcaggagttc
gtgatcggcggctattcggaaccgtcgggcagccgcgcggcgttcggtgcgctgctgctc
ggcgtgcacgacagcaagggcaaactgcagtacgcggggcgcgtgggcaccggtttcgac
gccgcgttgttgcgctcggtgaagaaggaactcgacgcgcacgaaacgaagcgcatgccg
ttcgcgagcacaccgcgcgagcgcagccgcacgcctgtgcattgggtcgagccggtgctc
gtcgcggaatgcaatttcgccgaatggacgagcgacggcatcgtgcgtcaggcgtcgttc
gtgagtctgcgcaaggacaagccggcgcgccagatcgtcaaggaagcaccacgcaagggg
gacgacgtgcaacagcaaaccgatatcgaggccgaggttgcgccgaaaaagcgtgcggcg
cgcggcgaggccaacaaaaccgccgccaaatccgccagcaaagtggccacgaaaaccgcg
agcaaagtagccaccaaatccgccacccaaaactcagccgaacccaccgcaccgcgagcc
aaaaaatcctcgcccgccgaagtcgccggcgtccgcatctcgcatcccgaccgcgtcatc
gacaagagcaccggcgcgcgcaagatcgacctcgtgcagtactacgaatccgtcgcgcaa
tggatgctgccgcatctcgtcgaccggccggtgtcgctcgtgcgcgcgccggaggacatc
ggcggcgagctgttttttcagaagcacacgcagaagctgtcgattccaaacatcacgcag
catcccgggctcgatccgggtcatcctccgctgatcaccgtcgatagcgcgaaggcgctc
gtcggcgccgcgcaaatgggcacgatcgaatttcacacatggaacggcgtggcgtcgaac
atcgaaaagccggaccgcgtggtgttcgatctcgacccggacccgtcgctcggctgggac
cggatgatcgaggccgcgatgttgacgcgctcgctgctcgaggaactcggcctcacgtcg
ttctgcaagacgagcggcggcaaaggtctgcacgtggtcgtgccgctctcgaaacacgcg
gggtgggacgaggtgaaggagttctcgcaggccgtcgcgcaacacatggcgagcacgctg
cccaagtacttcagcgcgaagatgggcgcgcagaatcgcaagcagaagattttcgtcgac
tatctgcgcaataaccgcggctcgagtaccgtcgccgcgttttcggtgcgggcgcgtccc
ggcctcggcgtttcggttccgcttgcttgggacgaagttgcgcaaacgacgggcggcgat
cagtggaatatcgagaacctgcacgagcgcctcgacgaactgaagggagacccgtgggcc
gattatgcaaagacgcggcaacgcattacggcggcgatgaggaagcgtctgagcggcgcg
tag

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