Planococcus glaciei: FK545_19560
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Entry
FK545_19560 CDS
T06125
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pgq
Planococcus glaciei
Brite
KEGG Orthology (KO) [BR:
pgq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgq03016
]
FK545_19560
Enzymes [BR:
pgq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FK545_19560
Transfer RNA biogenesis [BR:
pgq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FK545_19560
Prokaryotic type
tRNA splicing ligases
FK545_19560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDY46738
LinkDB
All DBs
Position
3825180..3826394
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AA seq
404 aa
AA seq
DB search
MIKVSGTQTEALIYSDSPQLTAIEQIEELCNQAFLKDAKIRIMPDYHAGKGCVIGTTIEL
TDKVVANLVGVDVGCGVKVVQLDDRSIDFNQLDQIIRQFVPSGIELHSEETVGSVKEEFP
ESADFKAGHILNNDRSRFSLGTLGGGNHFIEVSRDEDGRHYLLIHTGSRYVGAKIAQHYQ
KLAFDSLNRNGISDIIAQLKLENRHSEIQSAIKRFGDEHPPIPKDLAYLEGQAFHDYIHD
MKLAQQYALANRNQIAETILSRMNLTQAGSFDSIHNYIDTENMILRKGATSAQKGEQLVI
PINMRDGSILATGKGNSEWNYSAPHGAGRVMSRTQASNTLNLEDFTATMKDVWTSSVSLE
TLDEAPMAYKPLEEIMGQIGDTVEVSKIIKPVYNFKASDKFVRR
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagtatcgggaacacagacggaagcgttaatttactcagattcccctcagcta
actgcaattgaacagattgaagaattatgcaaccaggcatttttgaaggatgccaaaatc
cgtatcatgccagattaccacgccggaaaaggctgcgttatcggaaccacaattgaatta
accgataaagtcgtcgccaatctggtaggggtcgatgtcggctgcggcgtaaaagtagtg
cagctggacgaccgctcgatcgatttcaatcaattggaccagattatccgccagtttgtg
ccgagcggcattgagctgcattcggaagaaaccgtgggatcggttaaggaagaatttcca
gaatctgctgattttaaagccgggcacattcttaacaatgaccgaagccgctttagcctc
ggcaccttaggcgggggcaatcattttatcgaagtgtcacgggatgaagacgggcgacat
tatttgctgattcataccggcagccgctatgtcggcgcaaagattgcgcagcattatcaa
aaattggcgtttgattcattgaaccgcaacggcatttcagacatcattgcccaattgaag
ctggaaaaccggcattcggaaatccagtccgccattaaacgctttggcgatgaacacccg
ccgattccaaaagacttggcttatttggaaggccaggctttccacgattatattcatgac
atgaaactggcccagcaatatgcactcgccaaccggaaccagattgcagaaacgatcctt
tcccggatgaacttgacccaagccggttcatttgattcgatccataactatatcgacacc
gaaaacatgatcttgcgaaaaggcgccacttctgcgcaaaaaggcgagcagcttgtcatt
ccgatcaatatgcgcgacggttccatcctcgcgaccggcaaaggcaatagcgagtggaac
tattcagccccgcacggcgctgggcgggtgatgagccggacgcaagcttccaatacgctg
aacctggaagatttcactgctaccatgaaagatgtctggaccagttccgtgtcccttgaa
acactcgacgaagcgcctatggcctacaagccgcttgaagaaatcatgggccagatcggt
gacactgttgaagtatcaaaaatcatcaaacccgtctataatttcaaagcaagcgataag
tttgtccgaagataa
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