KEGG   Pedobacter ginsengisoli: CPT03_05050Help
Entry
CPT03_05050       CDS       T05145                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pgs  Pedobacter ginsengisoli
Pathway
pgs03030  DNA replication
pgs03410  Base excision repair
pgs03420  Nucleotide excision repair
pgs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pgs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CPT03_05050
   03410 Base excision repair
    CPT03_05050
   03420 Nucleotide excision repair
    CPT03_05050
   03430 Mismatch repair
    CPT03_05050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pgs03032]
    CPT03_05050
   03400 DNA repair and recombination proteins [BR:pgs03400]
    CPT03_05050
Enzymes [BR:pgs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CPT03_05050
    6.5.1.6  DNA ligase (ATP or NAD+)
     CPT03_05050
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CPT03_05050
DNA replication proteins [BR:pgs03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CPT03_05050
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CPT03_05050
DNA repair and recombination proteins [BR:pgs03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CPT03_05050
   NER (nucleotide excision repair)
    Other NER factors
     CPT03_05050
   MMR (mismatch exicision repair)
    Other MMR factors
     CPT03_05050
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ATP55875
UniProt: A0A2D1U2Q3
LinkDB All DBs
Position
complement(1233742..1235334)
Genome map
AA seq 530 aa AA seqDB search
MKRFAELIQQLETSNKTNDKIAALVDYFNEADDLDKPYVIAMFTGKRPKRPVSTALIKLW
AIELSRLPEWLFTESYHNVGDLSETIALILPPPAQISNRKLHEWIKDLALLNGQEDSHKK
TFIVNAWNSLETRERFIFNKLISGNFRIGVSNKMLVNALEKQSSTDSSKIMHSIMGKWEA
ADISYNDLIAGTHVNTDNSWPYPFCLAYALEAEPSGLGEPGEWQAEWKWDGIRGQIIKRN
GELFIWSRGEELVTDQFPELHFLATELPDGTVLDGEILSVKDSKIQAFSILQQRLNRKTI
NKTQLNDAPIGFYTYDLLEHKGRDLREEPLANRRKLLEQTISQLADQGIVALSPVVIFSN
WAELAELREGSRAINSEGIMLKKLDSSYHSGRKRGDWWKWKINPYTVDTVMIYAQKGSGR
RANFFTDYTFAVKDGDQLITVAKAYSGLTDAEIKEVDSFVKKNALEKFGPVRTVKPELVF
EIAFEGIAESKRHKAGLALRFPRIARWRKDKKADEINTLDDLRQLLQSTL
NT seq 1593 nt NT seq  +upstreamnt  +downstreamnt
gtgaaacgctttgcagaattgatacaacagcttgaaacaagtaacaaaacaaacgataaa
attgccgcccttgtagactatttcaatgaagctgacgacctggataaaccgtacgtaata
gccatgtttaccggcaaacgccctaaacgcccggtaagtactgctttaattaagctgtgg
gctattgaactgagtaggctacccgaatggctatttacagaaagttatcataacgtgggc
gacttaagcgaaactattgcgcttatactacctccacctgctcagatctctaatcgtaaa
ttacatgaatggataaaggacctggctttattaaatggacaagaggacagccataaaaaa
acctttattgtgaacgcctggaacagtttagaaacaagggaacggtttatatttaataag
ctcatttcgggaaattttagaataggtgtatccaacaagatgcttgtaaatgcactggaa
aaacaaagcagcactgatagcagcaaaataatgcacagtattatgggtaaatgggaggct
gcagacatctcctataatgaccttattgcaggtactcacgtaaataccgacaactcctgg
ccctatcccttttgcttggcttacgctttggaagctgaaccttctggtctgggcgagcca
ggcgagtggcaggccgaatggaaatgggacggtattcgcggacaaattattaagcggaat
ggggaattgttcatatggtcgcgtggcgaagaactcgtaacagatcagtttcctgagctt
cattttctggctactgaattaccggatggcaccgtactggatggagaaatactttcagta
aaggatagcaaaatacaggcttttagcatactacaacaaagactaaatagaaaaactatc
aataaaacccagcttaatgacgccccaataggtttttacacatacgaccttcttgaacat
aaaggccgtgatttaagggaagaaccacttgcaaaccgcagaaaattgcttgaacaaacc
attagccaattagcagatcagggtattgtagcattgtcgcccgttgttattttcagtaac
tgggcggaactggcagagctaagagaaggttcaagagccattaatagcgaaggtattatg
ctaaaaaagctagattcatcatatcactccggaagaaaacgtggcgattggtggaaatgg
aaaataaacccttatactgttgatacggtaatgatttatgcgcaaaaaggaagtggccgc
agggcgaacttctttacagattatacctttgcggtaaaggatggcgatcaattaattact
gttgccaaagcttactctggtttaactgatgctgaaattaaagaagtagatagttttgtg
aaaaaaaatgccctggagaagtttggtcccgtacgcacggtaaagcctgaactggtgttt
gaaatagcttttgaaggtatagccgaaagtaaaaggcacaaagcaggattggcattaagg
tttccacgaattgccaggtggagaaaagacaaaaaggccgatgagataaatacgcttgac
gaccttaggcaattattacaatctactttatga

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