Pedobacter ginsengisoli: CPT03_09375
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Entry
CPT03_09375 CDS
T05145
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPT03_09375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgs03019
]
CPT03_09375
03400 DNA repair and recombination proteins [BR:
pgs03400
]
CPT03_09375
Enzymes [BR:
pgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPT03_09375
Messenger RNA biogenesis [BR:
pgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPT03_09375
DNA repair and recombination proteins [BR:
pgs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CPT03_09375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TFIIE_alpha
Med11
HemN_C
Motif
Other DBs
NCBI-ProteinID:
ATP56670
UniProt:
A0A2D1U4Y4
LinkDB
All DBs
Position
complement(2268833..2270725)
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AA seq
630 aa
AA seq
DB search
MSEAEILKRYWGFDSFRPSQDEIIASVLNGNDTLALLPTGGGKSLCFQVPAMVMDGICIV
ISPLVALMKDQVEGLKEKGINAVAIYAGMGKREIDILLDNCIYGNIKFLYLSPERLLSEL
VRERISYMNVNLIAVDEAHCVSQWGYDFRPPYLLVSAIREIHPEVPVLALTATATQFVRN
DIAEKLAFKNAKVFVQSFARKNLSYVVLNDEDKHRKLIDIVKNVKGSGLVYVRNRRETSE
IALFLKRNGIAADFYHAGVEKDDRFKRQEDWKRNVTRVMVATNAFGMGIDKPDVRFVVHL
DLPESLEAYYQEAGRAGRDGKRSYGVLLSNKSDQMALEVKYANSFPTLDEIKKIYHYLGN
YFQLAFGAGEGLSFNFDIADFCKRFNIGVIKTIAGLKFLERDGYIVLSENIFLPSRVLFT
VGNEDVYRFQIENAGYDPLIKAILRSYGGAFDQYVKIQESEIAKKVRMSFNDVVRLLNNL
QDQGILSYLPQTDQPQLQYIRARVDLLHIDIDVKYIELRKKIQTDQINAVLAYATKAECR
SIQLLRYFDEPDGEKCGVCDVCLAEKKAEDLDQLSDKIDFEIITLLQSQGHTLDNLVNAI
KVGNENEKLDRIRELLDAGKIKTDGKNYYL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagcagagatattaaaacgatactggggatttgatagtttcaggccatcgcag
gatgaaattattgcatcggttttaaacggaaatgacaccttggcattattaccaacagga
gggggcaaatcgctttgctttcaggttcctgcaatggttatggatgggatatgtattgtt
atttcgcccctggtggcacttatgaaagatcaggttgaagggctaaaagaaaagggcata
aatgcggtggctatttatgcaggcatggggaaaagagaaatagatatccttttagataat
tgcatttatggtaatattaagtttctttacctttctccggagcgtttactttcggaattg
gttagagaaagaatctcttacatgaatgtaaaccttattgctgttgatgaagcgcattgt
gtttcgcagtggggctacgatttcaggccgccatatctgctggttagtgcaatcagagag
attcatccggaggttcctgttctggctttaacggctacggctacccagttcgtaaggaat
gatattgctgagaaattagcgtttaaaaatgcgaaggtttttgtgcagagttttgcacgt
aaaaatttgagttacgtagttttaaatgacgaggataaacacagaaaactgatagatatt
gttaaaaatgtaaagggcagtggattggtatatgtgaggaaccggcgtgaaacttcggaa
atagcattgtttttaaaaagaaatggcattgctgcagatttttatcatgccggggttgaa
aaggatgaccgctttaaaaggcaggaagactggaagcgtaatgttacccgggtaatggtg
gcaaccaatgcttttggaatggggatagataagccagatgttcgttttgtggttcatttg
gatttgccagaaagtttggaagcttattatcaggaagcgggcagggctggcagggatggt
aaaagatcatatggtgttttgctgtcaaataaatcagatcaaatggctttggaagttaaa
tatgccaatagtttccctacgttagatgagattaaaaagatctatcattatctgggtaat
tactttcaattggcatttggcgcaggcgaagggttaagctttaactttgatattgctgat
ttttgtaaacggtttaatataggtgtgattaagacaatagccggcctgaagtttttggaa
cgcgatgggtatattgtgttatccgaaaatatatttttaccgtcgagggtgttatttaca
gtaggaaatgaagatgtttatcgctttcagatagaaaatgcgggttacgatccgcttatt
aaagctattttaaggtcatacggtggtgcctttgaccagtatgtgaaaattcaggaatca
gagattgcaaagaaggtaaggatgtcgtttaatgatgtggtcaggttgctaaacaatttg
caggatcagggcatattgtcgtatttacctcaaacggatcagccacagctgcaatatata
cgtgcccgggttgatttgctgcatattgatattgatgttaaatatattgaactgagaaag
aagattcaaacagatcagatcaatgcggtacttgcttatgctactaaggctgaatgccgg
agtattcaattgctgaggtattttgatgagcctgatggtgaaaaatgcggggtttgtgat
gtctgccttgctgagaaaaaagcggaagatctggatcagttatctgacaaaatagacttt
gagattattacattattacagagtcagggccatactttagataacctggtaaacgctata
aaggtgggcaatgaaaatgaaaaattggataggataagggagttgcttgacgccggtaaa
attaaaacagatgggaaaaattattacctttaa
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