Porphyromonas gingivalis TDC60: PGTDC60_0063
Help
Entry
PGTDC60_0063 CDS
T01516
Symbol
recQ-2
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGTDC60_0063 (recQ-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgt03019
]
PGTDC60_0063 (recQ-2)
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_0063 (recQ-2)
Enzymes [BR:
pgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PGTDC60_0063 (recQ-2)
Messenger RNA biogenesis [BR:
pgt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGTDC60_0063 (recQ-2)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PGTDC60_0063 (recQ-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
HTH_5
TrmB
HTH_36
DprA_WH
HTH_9
Motif
Other DBs
NCBI-ProteinID:
BAK24233
LinkDB
All DBs
Position
78107..80230
Genome browser
AA seq
707 aa
AA seq
DB search
MSEELQHLSPGERLYPLSTDMKGLPDRYLHGEVYDHEQSDEIGGEEEGFLPPMPEEVSNE
IEAPSLHTPEEVLLHYWGYPSFRPVQLPIIESVLAGKDTLGLLPTGGGKSITFQVPGLLL
PGLTLVVTPLIALMRDQIMGLRQKGIKATAVHAGMTREQIITTLDNCIYGRYKFLYVSPE
RLGSELFLSRLHALRVSLLVVDECHCISQWGYDFRPAYLSIADIREALPDVPVLALTATA
TRPVIDDIQRILRFPEPNVLRKSFFRPNLSYSIRRTADKETMLLHILSRVDGSAVVYCRN
RDKARDLARFLGENGFSADFYHAGLNHVTREIRQKSWMEGETRIIVCTNAFGMGIDKPDV
RLVLHMEMPSSPEEYFQEAGRAGRDGERAYAVLLAGEDDIFNLKRRVSNEFPPREYIATV
YNRICNYLQIGEGEGFERSFDFDIDAFCRNFRMFPTQVLAAIRILDVAGIWEYREEKTRS
RLTIQVQRDELYRMRSEQASDSVLTALMRTYDGLFADYVSIVESELAEKTGLSVDQVYQQ
LLLLNKAGIVNYIPQKNLPRIYFLTRREDAELLQIPRAAYEDRRDRLKARIDQSLRYIEE
ENTCRSRMLLAYFGEEQSHNCKLCDVCLRRKDGELHHHEVDDLLHFLEQRLTEETPYVLI
ADICRELHHHPDVVLKAIRFVMKESWQYSTDGDTVFLTHKLPGGLNL
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagagctgcaacacttgtcaccgggtgaacgtctctatcccctctccaccgat
atgaaagggcttcccgatcgttatttgcacggggaagtgtacgaccacgaacagagtgat
gagatcggaggagaggaagaaggctttcttcctcctatgccggaggaggtttccaatgag
atcgaagctccgtctctgcatacgccggaggaggttttgctacactattggggctaccct
tcgttcaggcctgtgcagctcccgatcatcgaatccgttttggcagggaaggacacattg
ggactactgcccacgggtggtggtaagagtatcacgttccaagtccccgggctgctactg
ccgggtttgactctcgtggtaacgccactgattgctctgatgcgggaccagatcatggga
ttgcgccaaaaggggatcaaggcgacagccgttcatgccggaatgacgcgcgagcagatt
atcaccacgctggacaactgtatttacggccgctacaaatttctatacgtttcgcccgaa
cgtctgggctcggaacttttcctcagccgtctgcatgctctcagggtaagtctgctggtc
gtagacgaatgtcactgtatatcccagtggggctatgacttccggccggcatacctctcg
atagcagacatcagggaggccctgccggatgttcccgtattggcattgacagctacggct
acacggccggtgatcgacgacatacaacgcatcctccgatttccggagccgaacgtgctg
agaaaaagctttttccgccccaatctgtcgtattccatccgccggacggcagacaaagag
acgatgctgctgcatatcctcagtcgcgtggacggttcggccgtcgtatattgtcgcaac
cgagataaggcgcgcgatctggcacgcttcctcggcgaaaacggcttctcggccgatttc
tatcacgccggtctcaaccatgtgacacgggaaatacggcaaaaaagctggatggaaggg
gaaacgcggatcatcgtctgcaccaatgctttcgggatggggatcgacaagcccgatgtc
agattggtacttcacatggaaatgccctcttcgccggaggagtatttccaagaggccggt
cgcgccggtcgggacggagagagggcttatgccgtcttactggcaggcgaggacgacata
ttcaacctgaaaaggcgagtgagcaatgagtttcctccacgcgaatacatcgccacggtg
tacaatcggatttgcaactacctgcagataggagaaggagagggattcgagcgatctttc
gacttcgacatcgatgctttttgccggaatttcaggatgttcccaacacaagtattggct
gcgattcgcatcctcgatgtagccgggatttgggagtatcgggaggaaaagacgcgctcg
cgcctgacaatacaggtgcagcgcgacgagctataccgcatgagaagcgaacaggcttcc
gacagcgtgctgactgccctgatgaggacatacgacgggttgtttgcggattatgtttcc
atagtggaaagcgaattggccgaaaagacagggcttagcgtcgatcaggtctatcagcaa
ctcctgcttctgaacaaagccggcatagtgaactatattccacaaaagaatctgccacga
atttattttctcacaagacgtgaggatgcagaattgctccagatacctcgtgcggcttac
gaggaccgtcgcgatcggcttaaagcacgaatcgatcaatcgctccgctacatagaggaa
gaaaacacctgtcgcagccgcatgctcctggcctacttcggcgaggagcagtcccacaac
tgcaagctatgcgacgtatgtctaaggagaaaagacggagaactgcaccatcatgaagtg
gacgacttgctacatttcctcgagcaacgtttgaccgaagaaacaccctacgtactgatt
gcggatatctgccgagaactgcatcaccatcccgacgtcgtgctcaaagcaatacgcttc
gtcatgaaagaatcctggcagtactccactgatggcgataccgtcttcctgacgcacaaa
cttcccggaggactgaacctttag
DBGET
integrated database retrieval system
