Phenylobacterium parvum: HYN04_05395
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Entry
HYN04_05395 CDS
T05485
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phb
Phenylobacterium parvum
Pathway
phb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYN04_05395 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phb03021
]
HYN04_05395 (rpoC)
03400 DNA repair and recombination proteins [BR:
phb03400
]
HYN04_05395 (rpoC)
Enzymes [BR:
phb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYN04_05395 (rpoC)
Transcription machinery [BR:
phb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYN04_05395 (rpoC)
DNA repair and recombination proteins [BR:
phb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYN04_05395 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AWM77243
UniProt:
A0A2Z3HL49
LinkDB
All DBs
Position
1118459..1122652
Genome browser
AA seq
1397 aa
AA seq
DB search
MNQEVLNIFNPVQAAPTFDRIRIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKS
LPSRIAMMLDMPLKDIERVLYFEYYIVTEPGLTALKMHQLLSEDDYLRYQEEFGDDSFTA
EIGAEAIQGLLKGIDLPKEADKLREDLLTTTSEMKLKKTSKRLKLIESFIESKNRPEWMI
LSVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSLAKDGEPGEGKLFADLGEIDAALD
AGVVTLHSKIKARHEEMNAEGELVRRVIDTTPGRMKIVALFPKHPAVGHRLLEKNLTKKE
IGNLIETVYRHCGQKATVIFADQMMGLGFREAAKAGISFGKDDIIIPQRKKPIVEETRKL
VEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAEISTAAKDATGREGEINSIFM
MANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVQEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIINEEDCGTSRGITLSAVVEGGDVLVSLGARILGRHA
AEDVRHPDTGEVIVPADAYFDEDEIEKVEAAGVQSVRVRSVLTCEAKLGVCGTCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAEQSFFEAGNAGVVRIVGGST
VVAPDGALICMSRNLVLSVQVDGKDRETYKPPYGARLKFKDGEKVKRGERLAEWDPYSTP
IITEVGGRVRFEDLVENVSFREEADEATGISNRVVVDWRASAKGGDLRPAMAVLDETGAY
RRLANGSEARYLLPVGAILSMGDGDEIRPGEVLARMSTESAKTRDITGGLPRVAELFEAR
RPKDCAVIAEMDGRVEFGRDYKNKRRIKITPEDGGEAVEFLIPKGKHIAVHDGDVIRKGE
YLIDGNPDPHDILRIQGIEALAEFLVDEIQEVYRLQGVPINDKHIETIVRQMLQKGEILE
PGDTGLLKGDHLDMTEIMEENAKAEARGGRPAVTQPVLLGITKASLQTRSFISAASFQET
TRVLTEASVQGKTDTLEGLKENVIVGRLIPAGTGSFLRGLQRVAARRDAALSASREEAME
PLPEVIAVEAEEEGLGL
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctgaatatcttcaacccggtccaggccgccccgaccttcgaccgt
atccgcatcgccctcgccagcccggaaaagatccggtcctggtccttcggcgagatcaag
aagcccgagacgatcaactaccggaccttcaagccggagcgcgacggcctgttctgcgcc
cgcatctttggtccgaccaaggactacgagtgcctctgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgcggcgtcgaggtcaccctggcgcgcgtccggcgc
gagcgcatgggccacatcgagctggccagcccggtcgcccacatctggttcctgaagtcc
ctgcccagccgcatcgccatgatgctggacatgccgcttaaggacatcgagcgcgtcctg
tacttcgagtactacatcgtcaccgagccgggcctgacggccctgaagatgcaccagctg
ctctccgaggacgattacctccgctaccaggaggagttcggcgacgacagcttcaccgcc
gagatcggcgccgaggcgatccagggcctgctcaagggcatcgacctgcccaaggaggct
gacaagctgcgtgaggacctcctcaccacgacctccgagatgaagctgaagaagacgtcc
aagcgtctcaagctcatcgagagcttcatcgagagcaagaaccggcccgagtggatgatc
ctttcggtcatcccggtgatcccgccggaactgcgccccctggtgcccctggacggcggc
cgcttcgccacctcggacctgaacgacctctatcgccgggtgatcaaccggaacaaccgc
ctgaagcgcctgatggagctgcgggccccggacatcatcatccgcaacgaaaagcggatg
ctgcaggaggcggtcgacgccctgttcgacaacggccgccgcggccgggtcatcaccggc
gccaacaagcgcccgctgaagtccctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctgggcaagcgggtcgactattcgggccgttcggtcatcgtggtcggt
cccgagctcaagctgcatgagtgcggccttcccaagaagatggcgctcgagctcttcaag
cccttcatctacgcccgccttgacgccaagggcctgtcgggcaccgtcaagcagtccaag
cgcatggtggagcgcgagcagccggccgtctgggacatcctggatgaggtgatccgcgag
catccggtcctgctgaaccgggcgccgaccctgcaccgcctgggcatccaggccttcgag
cccaagctgatcgagggcaaggccatccagctgcacccgctggtctgcgccgccttcaac
gccgacttcgacggcgaccagatggccgtccacgtcccgctgagcctcgaggcccagctg
gaagcgcgcgtcctgatgatgtcgacgaacaacatcctgtcgcctgccaatggtcgcccg
atcatcgtgccgtcgcaggacatcgtcctaggtctctactacctgtccctggccaaggac
ggcgagcccggcgagggcaagctgttcgcggacctgggtgagatcgatgcggccctggac
gcgggcgtggtgaccctgcactccaagatcaaggcccgccatgaggagatgaacgccgag
ggcgaactggtccgcagggtgatcgacaccacgccgggccggatgaagatcgtcgccctg
ttcccgaagcatcccgccgtcggtcaccggctgctggagaagaacctcaccaagaaggaa
atcgggaacctcatcgagaccgtctatcggcactgcggccagaaggcgacggtgatcttc
gccgaccagatgatgggcctgggcttccgtgaggcggccaaggccggcatctccttcggc
aaggatgacatcatcatcccgcagcggaagaagccgatcgtcgaggaaacccgcaagctc
gtcgaagagtacgagcagcagtacgcggacggcctcatcaccaagggggagaagtacaac
aaggtcgtcgacgcctgggccaaggccacagaccgcgtcgccgacgagatgatggcggag
atctccaccgccgcgaaggacgccacaggccgggaaggggagatcaactccatcttcatg
atggccaactcgggcgcccggggctcgcaggcccagatgaagcagcttggcggcatgcgc
ggcctgatggccaagccctccggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggccttaccgtccaggagtacttcaactccacccacggcgcccgcaagggcctggcg
gacaccgccctcaagacggcgaactcgggttacctgacccgccgtctcgtggacgtggcc
caggactgcatcattaacgaggaagactgcggcaccagccggggcatcaccctcagcgcc
gtggtcgagggcggcgacgtgctcgtctcgctcggcgcccgcatcctgggccgccatgcg
gccgaggatgtccggcaccccgacacgggcgaggtcattgtccccgccgacgcctacttc
gacgaggatgagatcgagaaggtcgaggccgccggggtccagtccgtgcgcgtgcgctcg
gtcctgacctgcgaggccaagcttggcgtctgcggcacctgctatggccgtgacctggcc
cgcgggaccccggtgaacatcggcgaggcggtcggcgtcatcgccgcccagtccatcggc
gaacccggcacccagctgaccatgcggaccttccacatcggcggcacggcccaggtggcc
gagcagtcgttctttgaggccggcaacgccggcgtcgtgcggatcgtcggcggctccacc
gtggtggctcccgacggcgcgctgatctgcatgagccgcaacctcgtgctcagcgtccag
gtcgatggcaaggaccgcgagacctacaagccgccctacggcgcccgcctgaagttcaag
gatggcgagaaggtcaagcggggcgagcgcctggccgagtgggacccctactcgaccccg
atcatcaccgaagtgggcggtcgcgtccgcttcgaggacctagtcgagaatgtctccttc
cgcgaggaagctgacgaggccaccggcatctccaaccgggtcgtggtcgactggcgggcc
tccgccaagggcggcgacctgcgtccggccatggccgtgctcgacgagaccggcgcctat
cgccgcctcgccaacgggtccgaggcccgctacctgctgcctgtgggggccattctctcc
atgggcgatggcgacgagatccgccccggcgaggtcctggcccggatgtccaccgaaagc
gccaagacccgcgacatcaccggcggtctgccgcgggtcgccgagctgttcgaggcccgc
cggccgaaggactgcgcggtcatcgcggagatggacggccgcgtcgagtttggccgtgac
tacaagaacaagcgccggatcaagatcacccccgaggatggcggcgaggccgtcgagttc
ctgatcccgaagggcaagcacattgcggtccatgacggcgacgtcatccgcaagggcgag
tacctgatcgacgggaaccccgatccgcacgatatcctgcgcatccaggggatcgaggcc
ctggccgagttcctggtggacgagatccaggaggtctatcgcctccagggcgtgccgatc
aacgacaagcacatcgagaccatcgtccggcagatgctgcagaagggcgagatcctggag
cccggcgacaccggcctgctcaagggcgatcacctcgacatgacggagatcatggaggag
aacgccaaggccgaggcccgcggcggccgtcccgccgtgacccagccggtcctgctgggc
atcaccaaggcttcgctccagacccgcagcttcatcagcgcggcctccttccaggagacc
acccgcgtgctgaccgaggcttccgtccagggcaagaccgataccctggaaggcctgaag
gaaaacgtcattgtcggccggctcatcccggcgggcacaggctcgttcctgcgtggcctg
cagcgggtcgccgcccgtcgcgacgccgccctcagcgccagccgggaagaggccatggag
ccgcttcccgaggtcatcgcggtcgaagcggaagaggagggcctgggcctctag
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integrated database retrieval system
