Phenylobacterium parvum: HYN04_12780
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Entry
HYN04_12780 CDS
T05485
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
phb
Phenylobacterium parvum
Pathway
phb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HYN04_12780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phb03400
]
HYN04_12780
Enzymes [BR:
phb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HYN04_12780
DNA repair and recombination proteins [BR:
phb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HYN04_12780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
AWM78551
UniProt:
A0A2Z3HYY0
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All DBs
Position
2726860..2727663
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AA seq
267 aa
AA seq
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MRLRLATWNVNSVRLRAGQVTRFLLDQAPDVLCLQEIKCRDGEFPAAEFEAAGYPHMRIR
GQKGSHGVAILSRLPLEDAPDLEVCREGHARAVGARVAGIEVQNFYIPAGGDVPDPEANP
KFAHKLDFLGRLTAEAARRDPTSALVITGDLNVAPGEFDVWSHRQMLKVVSHTPVELEAM
EALRAAGGFTDLVRAAIPDPQKLFSWWSYRAADFRASNRGLRLDHIWISPGLRKAALDGG
AEARVHDDVRAWDRPSDHAPVSADFRL
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgaggctcgccacctggaacgtgaattccgtccgcctgcgggccgggcaggtc
acgcggttcctgttggaccaggcgcccgatgtcctctgcctgcaggagatcaagtgccgg
gacggcgagttccccgctgcggagttcgaggcggcgggctatccgcatatgcggatccgt
ggccagaagggctcgcacggcgtcgccatcctctcgcgcctgcccctggaggacgcgccc
gacctggaggtttgccgggaaggccacgcccgcgcggtgggcgcgcgcgtggcggggatc
gaggtgcagaacttctacattccggcaggcggcgacgttcccgaccccgaggccaatccc
aagttcgcccacaagctggacttcctgggccgcctgaccgcggaggcggcgcggcgggac
ccgacttcggccctggtgatcaccggcgacctcaatgtggcccccggcgagtttgacgtc
tggagccatcgccagatgctgaaggtggtcagccacaccccggtggagctcgaggccatg
gaggcccttcgcgcagcggggggattcaccgacctggtgcgggccgccatcccggacccg
cagaagctgttctcctggtggagttaccgggcggccgacttcagggcttcgaaccggggc
cttcgccttgaccacatctggatctcgcccgggctccggaaggccgccctcgacggcggc
gccgaggcccgtgtccatgacgatgtgcgcgcgtgggaccggcccagcgaccacgccccg
gtcagcgccgacttcaggctctag
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