KEGG   Pedobacter heparinus: Phep_1702Help
Entry
Phep_1702         CDS       T00978                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
phe  Pedobacter heparinus
Pathway
phe03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:phe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Phep_1702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phe03400]
    Phep_1702
Enzymes [BR:phe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Phep_1702
DNA repair and recombination proteins [BR:phe03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Phep_1702
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ACU03913
UniProt: C6XUR3
LinkDB All DBs
Position
2014770..2017403
Genome map
AA seq 877 aa AA seqDB search
MGLDKYNHKRDFNKTAEPKAGKSKDADQLHFVIQKHDASHLHYDFRLEMEGVLKSWAVPK
GPSTDPKVKRLAMMVEDHPYDYKDFEGIIPKGEYGGGTVIVWDEGTYEPIEEIKGKKAQD
KYLRKQLKEGSLKIKLQGKKLKGEFALVKTRGMGENGWLLIKHKDDYAATADITKQDKSV
LSGKTIAAMEQTSDKVWQHGHEEKLEKAPKKKIPIGMKPMLATLVDEPFDDPDWVYEVKW
DGYRALGFSRKNGDVQLLSRNNKPFNEKFYPIYEVMQNWKIDAVVDGEILVLNDKGVSNF
AELQNWRSEADGELVYYVFDLIWYDGKDLTGLSLLQRQAILKSILPQDDDRIRLSKVFTA
EGTEFFEAAKKMGLEGIIAKKGSSTYTPGNRSTDWLKIKINKRQEVVIAGFTKNKDSSKQ
FSSLLLGVYERGHLQYVGKVGTGFSDQLQKEMMKQFEPLMITKSPFDEIPDVNKPSRFRP
NPPQAKATWLKPELVCEVAYAEVTSDGVFRHPSFQGMRIDKKAKDVIREAAVETKAVVNL
DMETDDMAKTNKHAKAIKPPKAAARKTLLNPKDETQVRKVCGHELKFTHLSKVYWPEDQV
TKRDLFNYYYQVAEYILPYLKDRPMSLNRFPGGINGQSFYQKDVKGKAPDWARTFPYTTG
EGEAKEYLVGDDEATLLWMVSLGCIEMNPWFSRVKSPDNPDYCVIDLDPDKQNFDQVVEA
ALTVKEVCDQMDVPSFCKTSGSTGIHIYIPLAAKYSYDQSQMFARIIVSLVHQRIPEYTS
LERMIPARKGKMYLDFLQNRPGATIAGPYSLRPKPGATVSMPLHWEEVKPGLKMTDFTIF
NALERLKSEGDFFRGVLGKGIDLEKTIHKAKGVFGNS
NT seq 2634 nt NT seq  +upstreamnt  +downstreamnt
atgggacttgacaagtataaccataaacgcgattttaacaaaactgctgagccaaaagct
ggcaaatctaaagatgctgatcaattacattttgtaatccagaaacatgacgcttcccac
cttcattacgatttcagactggaaatggaaggcgtgttaaaaagctgggcagtaccaaaa
ggaccgtcaacagaccctaaggtgaaacgtctggccatgatggtggaggatcatccgtac
gactataaagattttgagggcataattcctaaaggagaatatggtggtggaacagtgatt
gtttgggatgagggtacttatgaacctattgaagaaattaaaggaaaaaaagctcaggat
aagtacttgcggaaacagctgaaggaaggatcgctgaaaataaaactgcagggcaaaaaa
ctaaaaggggaatttgccctggttaaaacccgcggcatgggcgagaatggatggttgctg
atcaagcataaggatgattatgcagctacggcagatattactaaacaggataaatcagtg
ctatccggcaaaaccattgctgccatggaacagaccagtgataaagtatggcagcatggt
catgaggaaaaactggaaaaagcacccaaaaaaaagatacccataggcatgaaacccatg
ctggcaacgctggttgacgagccatttgatgatccggactgggtttatgaggtgaaatgg
gacggctacagggcgctcggcttcagcaggaaaaacggtgatgtacaattgctttcacgc
aataacaaaccattcaatgaaaaattttaccccatttacgaggttatgcaaaactggaaa
attgatgccgttgtagatggggaaatactcgtgctgaatgacaaaggagtctccaacttt
gctgaactgcaaaactggcgcagcgaagctgatggcgaactggtgtattacgtttttgac
ctgatctggtatgatggaaaagaccttaccggcttaagcttattgcagcggcaggcaatt
ttaaaaagcatattgccccaggacgatgaccgcattcgcctgagtaaggtatttaccgcg
gaaggaaccgagttttttgaggctgccaaaaaaatgggattggaaggcattattgccaaa
aaaggaagcagtacctatacaccgggcaaccgaagtaccgactggctgaaaattaaaatt
aacaaaaggcaagaggtggtgatagcgggttttaccaaaaataaggatagttcaaaacaa
ttcagttctttactgctgggtgtttatgaaagggggcatctgcagtatgtaggtaaggta
ggtacgggcttttctgatcagttgcaaaaggaaatgatgaagcagtttgaaccattaatg
attactaaaagtccttttgatgaaattccggatgtgaacaagccttcccgttttcgtccg
aacccacctcaggcaaaggcaacctggttaaaacctgaactggtttgtgaagtggcttat
gcagaagtcacttcagatggggtattcagacatccttcttttcagggcatgcgtatagat
aagaaagcaaaagacgtaataagggaggctgcagtagaaacgaaagctgttgtaaattta
gatatggagacagatgacatggctaaaacaaataaacatgcaaaggcgattaagccgccc
aaggctgctgcccgcaaaactttgctgaaccctaaagatgaaacccaggttcgtaaagtt
tgcggacatgaactgaaatttactcatttgagcaaagtatactggccggaagatcaggta
accaaaagagacctgtttaattattattaccaggttgcggagtacatattgccctacctg
aaagaccggcccatgtcattgaatcgctttcctggtggtattaatggtcagagtttttat
cagaaagatgtaaaaggaaaggcaccggactgggccagaacttttccttatactacgggt
gagggcgaagctaaagaatacctggtgggggatgatgaggccaccttactttggatggtc
tctcttggctgcattgaaatgaatccctggtttagcagggtaaaatcgcctgacaacccg
gactattgtgtgatcgaccttgatccggataagcagaattttgatcaggttgtagaagcg
gcccttacggtaaaggaggtttgcgaccagatggatgtgccaagtttttgtaaaacatcc
ggttctaccggtatccacatttatatcccccttgctgcaaaatacagttatgaccaatcg
cagatgtttgcaaggatcattgtcagtctagtccatcagcggattccggaatataccagc
ctggaacggatgattcctgcgcgcaagggaaaaatgtacctcgactttttgcaaaaccgt
ccgggggcgaccattgccggcccttattcattaagaccaaaaccaggtgcaacggtttct
atgcccctgcattgggaggaagtaaagcctggtttaaaaatgactgattttactattttt
aatgcgctggaacgtttaaaaagtgaaggtgatttttttagaggcgtactgggaaaaggc
attgatctggaaaaaacgattcataaagccaaaggtgtttttggcaatagttaa

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