KEGG   Pedobacter heparinus: Phep_2562Help
Entry
Phep_2562         CDS       T00978                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
phe  Pedobacter heparinus
Pathway
phe03030  DNA replication
phe03410  Base excision repair
phe03420  Nucleotide excision repair
phe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:phe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Phep_2562
   03410 Base excision repair
    Phep_2562
   03420 Nucleotide excision repair
    Phep_2562
   03430 Mismatch repair
    Phep_2562
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:phe03032]
    Phep_2562
   03400 DNA repair and recombination proteins [BR:phe03400]
    Phep_2562
Enzymes [BR:phe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Phep_2562
    6.5.1.6  DNA ligase (ATP or NAD+)
     Phep_2562
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Phep_2562
DNA replication proteins [BR:phe03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Phep_2562
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Phep_2562
DNA repair and recombination proteins [BR:phe03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Phep_2562
   NER (nucleotide excision repair)
    Other NER factors
     Phep_2562
   MMR (mismatch exicision repair)
    Other MMR factors
     Phep_2562
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ACU04766
UniProt: C6Y054
LinkDB All DBs
Position
2986750..2988357
Genome map
AA seq 535 aa AA seqDB search
MKRFTKLIQQLEMSNKTNDKIAALVDYFNEADELDKPYVIAMFTGKRPKRPVSTALIRQW
ATALSGIPEWLFSECYHNVGDLSETIALVLPPASELSTRKLHEWINELALLNGKDDDDKK
TFILKAWDSLETQERFIFNKLISGNFRIGVSGKMLVNALARQTGTESSKIMHSIMGKWEP
SQISYQDLMAGAHVNTDSSWPYPFCLAYALEAEPGALGEPLEWQAEWKWDGIRGQIVKRN
GELFIWSRGEELVTEQFPELHFLKDELEDGTVLDGEILSVKDGKVQAFSLLQQRLNRKTI
SKAQLSDAPIGFFTYDLLEHKGRDLRSDALSLRRELLTKTIEDLLTKHVVLLSPVIEFKS
WAQLAKLRTISRDINREGIMLKKMDSLYHSGRKRGDWWKWKINPYTVDTVMIYAQKGSGR
RASFFTDYTFAVRDGEKLVTVAKAYSGLTDKEIKEVNAFVVKNAIEKFGPVRTVRPELVF
EIAFEGIAESKRHKAGLALRFPRIARWRKDKKADEINTLDDLKQLLQATLLPAKA
NT seq 1608 nt NT seq  +upstreamnt  +downstreamnt
atgaagcgtttcactaaactcatacaacagctggaaatgagcaataagaccaacgacaaa
attgccgcgctggttgactattttaatgaagctgatgaactggataaaccttatgtaatt
gccatgtttaccggaaaaagacctaaaagaccggtaagcaccgccttgatcaggcaatgg
gccacagcattgagcggaattccggaatggcttttttcagagtgttaccacaatgtgggc
gacctgagtgagaccattgccctggtgctcccgcctgcatcggaacttagcacaaggaaa
ctccatgaatggatcaatgagctggctttactgaacggcaaagatgatgacgataaaaaa
actttcattttaaaagcctgggatagcctggaaacacaggaacgtttcatttttaacaaa
ctgatatctggcaatttcagaataggtgtatccggcaaaatgctggtcaatgcactggcc
agacaaaccggtacagaaagcagtaaaatcatgcacagcattatgggcaaatgggaaccc
tcgcagatcagttaccaggacctgatggcaggggctcatgtgaataccgacagctcctgg
ccctaccctttttgcctggcatatgcgcttgaagcggaaccaggtgcactgggcgaacct
ttggaatggcaggcagaatggaaatgggatggcatacgcggacaaattgtaaaacgcaat
ggcgagctttttatctggtcgcggggcgaggagctggtaactgagcaattcccggagctg
cactttttaaaagatgagctggaggatggaacagtactggatggagaaatactttctgta
aaagatggaaaagtacaggcatttagcttgctgcaacaaaggctaaacagaaaaaccatc
agtaaggcccagctaagcgacgccccgataggattctttacatacgaccttttggagcat
aagggaagagatttaagatcagatgccttaagtctgcgccgggaactgctgacaaaaact
attgaagatctgctcactaaacatgtagtgctcctgtcgccggttattgaatttaaaagc
tgggcgcaactggcaaaactcagaaccatatcgagggatatcaaccgtgaaggcatcatg
ttaaaaaaaatggattccttataccacagtggcaggaagcgcggcgactggtggaaatgg
aaaataaacccttatacagtggatactgtaatgatctacgcccagaaaggcagtggccgc
agggccagcttttttaccgattatacttttgctgtccgcgatggggaaaaactggttacg
gtagcaaaagcttattccggattaacagacaaagaaattaaagaagtaaacgcttttgtt
gtaaaaaatgcaattgaaaaatttggcccggtaagaactgttagaccggaactggtattt
gaaattgcatttgaaggaatagcagaaagcaaaaggcacaaagcaggtctggccctcagg
tttccgcgtattgcccgatggagaaaggacaagaaagcagatgagatcaatacccttgat
gatttaaagcaattgcttcaggctacattattgcctgccaaagcttaa

DBGET integrated database retrieval system