KEGG   Pseudonocardia sp. HH130630-07: AFB00_09680Help
Entry
AFB00_09680       CDS       T04486                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
phh  Pseudonocardia sp. HH130630-07
Pathway
phh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:phh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AFB00_09680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phh03400]
    AFB00_09680
Enzymes [BR:phh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AFB00_09680
DNA repair and recombination proteins [BR:phh03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AFB00_09680
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ANY06516
UniProt: A0A1B1ZLB0
LinkDB All DBs
Position
complement(2001878..2002819)
Genome map
AA seq 313 aa AA seqDB search
MLPMLATPGALPTGPGWSYEVKWDGMRVLASVTESDGGRMLTLHTRSGRDITSHFPELAE
LTGLAPDVVLDGEVVLLDSGVPSFAALAHRMQAVVGAAAAQRRPVTFMAFDVLRLYGVSL
LDRPLSERRATLERLDLAGRAHVEASPLYPDGAALLAVTAQRGLEGVVAKRASSVYRPGR
RSPDWVKVAHRHSQSCVVGGWRPEKGSRTRIGALLLGVGGPDGLEFAGRVGSGLAGAAVQ
ELLTDRLTPLTTGDPPFSAAVPRVDAAGATWCGPGVVVEVAHLGWTTAGRLRQPVFRGVR
DDVDPGDVRREPG
NT seq 942 nt NT seq  +upstreamnt  +downstreamnt
gtgttgcccatgctcgccacccccggcgccctcccgaccggccccggctggtcctacgag
gtcaaatgggacggcatgcgcgtgctcgcatcggtcaccgagagtgacggcggccggatg
ctgacactgcatacccgctccggccgggacatcacctcccacttccccgagctggccgag
ctgaccggcctggcgcccgacgtcgtcctcgacggcgaggtcgtgctgctcgactccggg
gtgcccagcttcgcggcgctggcccaccggatgcaggccgtggtgggtgcggcggcggcg
cagcgacgcccggtgacgttcatggcgttcgacgtgctgcggctctacggggtgtccctg
ctggaccggccgctgtccgagcgccgggccacgctggagcggctcgacctggccgggcgg
gcccacgtggaggcgtccccgctgtatccggacggtgcggcgttgctcgccgtgaccgcg
cagcgcgggctggagggggtcgtcgcgaagcgcgcgtcgtcggtctaccggccgggacgg
cgcagcccggactgggtgaaggtggcgcaccggcactcgcagagctgcgtggtgggcggc
tggcggccggagaagggatcgcggacccggatcggtgcgctgctgctcggcgtcggaggc
ccggacgggctggagttcgccggccgggtcgggtccggtctcgccggcgcggcggtgcag
gagctgctcaccgaccggctcacgccgctgacgaccggggacccgccgttctccgccgcc
gtcccgcgggtggacgcggccggggccacctggtgcggcccgggcgtcgtggtggaggtc
gcgcacctcggctggacgacggccgggcggctgcgccagccggtcttccgcggggtgcgc
gacgacgtcgacccgggtgacgtgcggcgcgaaccggggtga

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