Pseudopodoces humilis (Tibetan ground-tit): 102104864
Help
Entry
102104864 CDS
T02921
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102104864 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102104864 (PNLDC1)
Enzymes [BR:
phi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102104864 (PNLDC1)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102104864 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
102104864
NCBI-ProteinID:
XP_005518440
LinkDB
All DBs
Position
Unknown
AA seq
530 aa
AA seq
DB search
MEVGAEGFARHLPRLRRLILRAAFVALDMEFTGLHSLQNNEPSLFDSPAERYVKARQSVQ
RFTLAQLGLAIFSAENSDKYVVHSYNFFLFPSTLGIRDVEFALSASSIQFLSHYGFDYNK
FLKDGIPYMNEVQEKILRQHLLAGTWKVCSANNANRDVLKKAIDEVTSWIAAAKEEDTMI
LQDLNGYHMLEVQLVLRQALENVWTEPLGDKKVMVKKVSPKHRQLLENSSYDHCQKKLIL
LSARGFTNVFHILVKAKKPLVGHNMLMDLMHLHDKFYRPLPESYEEFKRNIHTLFPIIID
TKTVTKSVQKKCLFPRVSSLSEAYAVLCSSNLNPKGPPCPVIALASGCSRYAEKKCPHEA
GYDAFLCGSVLLMSAHLLLCRSTDDTVEADPSFSQYLTVLAEHVNKVNFIRGGVSSINLS
GEDAPCRHPPALVVHVRGWPGLTEGQIYQEFKARCRFDVRRLSKNQFVLLSQKYKHVRLI
LRDYRHHPHLQVSIYRHWRHSPSVNCLLQISGVVALWSLLAFVLGGARSC
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgggcgcggagggctttgcccggcacctgccgcgcctcaggcgcctcatcctc
cgcgccgccttcgtggcccttgatatggagtttactggtttgcattctctacaaaacaac
gagcccagcctgtttgactcccctgcggagcggtatgtgaaggccaggcagagtgttcag
cgcttcactcttgctcagcttgggctggcaatattctcagcagaaaattcagacaagtat
gtggtgcattcatataacttttttctctttccctcaacactgggaataagggatgtcgaa
tttgccctctctgcatctagtattcagttcctgtctcattatggctttgactacaacaag
tttctcaaagatggaatcccatacatgaatgaggtacaggagaagatccttaggcagcac
ctcttagcaggtacctggaaagtctgcagtgctaataatgcaaacagggatgtcctgaag
aaagctattgatgaagtgacctcttggatagctgcagcaaaagaagaggatactatgatt
ctgcaggatctgaatggctatcatatgcttgaagttcagctggttctgaggcaggctctt
gaaaatgtttggacagaacctcttggagacaagaaggtaatggtgaaaaaagtgagtcca
aagcatcgtcagcttctggagaactcttcttatgaccactgtcagaaaaagctcattctc
ctgtctgctcggggcttcaccaacgtcttccatatacttgttaaagccaagaagcccctg
gtgggacacaacatgctcatggaccttatgcatcttcacgacaagttctacaggcctctc
ccagagagctatgaggagtttaaaaggaacattcacaccctgtttcccatcatcatagac
accaagactgtaacaaagtctgtgcagaagaaatgtctctttcctcgagtatccagtctt
tcggaggcatatgcagttttgtgcagcagcaacctaaatcccaaaggtccaccgtgccct
gttatagctcttgcaagtggctgctcaagatacgctgagaagaaatgtcctcatgaggca
ggctatgatgcatttctctgtggttcagttcttctgatgtcagctcatttgctactgtgc
agatccacagatgatacagtggaggctgatccttctttctcgcagtatctcaccgtgtta
gctgagcatgtgaacaaagtgaatttcatccgaggtggtgtttcaagcattaatttgtct
ggggaagatgctccttgccgtcatccccctgccttggttgttcatgtccgaggctggcca
gggctgaccgagggacagatttaccaagagtttaaagctcgctgtcgctttgatgtcaga
cggctttcaaagaaccagtttgttctgctctcccagaaatacaagcacgtcaggctcatc
ctgcgggactacaggcaccaccctcacctgcaggtctccatctatcgccactggaggcac
tcgccgagcgtgaactgcctgctgcaaatctctggtgttgtggcactgtggtctctgttg
gcctttgtgctcggaggagctcgtagctgttga
DBGET
integrated database retrieval system
