KEGG   Pseudopodoces humilis (Tibetan ground-tit): 102110873Help
Entry
102110873         CDS       T02921                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
phi  Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:phi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    102110873 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phi03400]
    102110873 (LIG4)
Enzymes [BR:phi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102110873 (LIG4)
DNA repair and recombination proteins [BR:phi03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     102110873 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme LIG3_BRCT Tox-REase-9
Motif
Other DBs
NCBI-GeneID: 102110873
NCBI-ProteinID: XP_005516544
LinkDB All DBs
Position
Un
AA seq 912 aa AA seqDB search
MASAPVSQPPPKKTVASHVPFAHLCSTLEQIQKCKSRPEKTKYFKVFLESWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILNTVFTPVKGRIHVVHKRNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKNPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLPIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNIFEDVEFCVMTGTGKYSKTELESRIAQCGGSVVQNPGPETYCVVVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTANTDVVQLK
EVFSRMKDNKAMPVDLIAELEERYWWNNCQLGIFRGSTVYVDCYAVVNEPESKIPGTTLS
IRALELRFYGAKVVSHLEEGVSHVVVGEDHSRVEEMKVLRRTFGKKFKIVSELWVAHSVE
EGVAENEYQYLV
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atggcttctgcacctgtttcgcagcctcctcctaaaaaaacggtggcctctcatgtgcct
tttgcacatctgtgttctactctggagcaaatacagaagtgcaaatctcgtccagagaaa
accaagtatttcaaggtttttctggaatcctggaggaagttccatgatgcgcttcatcaa
aaagagaaggatgtcacagattccttttacccggctatgcgacttattctcccacagttg
gaaagagagaggatggcatatggaattaaagaaactatgcttgcaaagctctatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
acaggctcacgtggagatgctggagattttgcaatgatcgcatactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacatttagatgcaata
gctaataacaatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattgcac
aatgttactaccgatttggaaaaagtttgcagacagctgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttctctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcacccctagaaggttcgttaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttgggccatgaagtactgagcaaaagatatgaaatcttaaatactgtatttaccccg
gtaaagggcaggatacatgttgtccataagagaaatgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggagggaattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctctgtgctgttgcggagacaccccctccaaatgaa
aaaccgaccattttccactccatatgtcgtgttggctctggctataccatgaaagagttg
tatgatctaggcttgaaactggctaaacattggaagccgtaccataggaagaaccctcct
ggtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgact
tcagacatgttagaagacctcaggagcaaagcacaaggaaagctggcatctaagcacctt
cctatagatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagccgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatatatttgaagatgttgagttttgtgttatgacaggaacaggaaaatactcaaag
actgagctggaaagcagaatagctcaatgtggtggcagtgtggtacagaacccggggccg
gagacatactgtgtcgttgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaagagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgtgcagctcaag
gaggtattctcaagaatgaaagacaataaggcaatgcctgtggacttgattgcagagcta
gaagaacgttattggtggaacaattgtcagcttggcatattcagaggaagcactgtttat
gtggactgttatgctgttgttaatgagcccgaaagcaaaatccctggaactacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagatcattcacgggtagaagagatgaaagtgctcagg
aggacatttgggaaaaaatttaaaattgtatctgagctgtgggtagcacactcagtagag
gaaggagttgcagagaatgaatatcagtacttagtttaa

DBGET integrated database retrieval system