KEGG   Pseudopodoces humilis (Tibetan ground-tit): 102112779Help
Entry
102112779         CDS       T02921                                 

Gene name
HDAC6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
phi  Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:phi00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:phi01009]
    102112779 (HDAC6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phi03019]
    102112779 (HDAC6)
   04131 Membrane trafficking [BR:phi04131]
    102112779 (HDAC6)
   03036 Chromosome and associated proteins [BR:phi03036]
    102112779 (HDAC6)
Enzymes [BR:phi01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102112779 (HDAC6)
Protein phosphatases and associated proteins [BR:phi01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     102112779 (HDAC6)
Messenger RNA biogenesis [BR:phi03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     102112779 (HDAC6)
Membrane trafficking [BR:phi04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    102112779 (HDAC6)
Chromosome and associated proteins [BR:phi03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     102112779 (HDAC6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP SDA1 CDC45 DNA_pol_phi
Motif
Other DBs
NCBI-GeneID: 102112779
NCBI-ProteinID: XP_014117333
LinkDB All DBs
Position
Un
AA seq 1009 aa AA seqDB search
MAAPLSTASAAPARQPPGPLRLNRDPLGPAPVTSSRRARRQRRAGLQGRAGRRLPQQGAL
LQARRRGRARGRRAGLEAELQQLDLGAEVAAPTGTGLVSDGGDRADCGDSRPPGGLAPLW
AALEGLVQRCVPVQCRPATDEELLLVHSPLFVAQLEPPDSPGLGGSGPRRAVGAALALLE
QVLGGALRNGVALISPQDPQDSPEPAAVAARVAQKHLGVQRVLIVDWSPRPGRSLPRLFQ
EDPSVLYFGAQRGREPPPSPGHGPGEGFSVELRWEQPGVTDGDYVAAALHVLLPIAFQFQ
PQLVLVEASLEDLGGSLGVSPAGFSLLTHLLSALGRGRLLLLLQGGPDLGASPGGVGAVL
RTLLGDPGDPPGPITPTPSGLASIARTLSIHQQYWGCLQSTEIEEEEEEEEEEKEEEEEA
EAEAGEEEEENEDEDEGKEELEGDGNPPETPPEPPPRARVGLVYDPRMEEHRNTWDSQHP
ECPQRLSRVLQRLQELGLAQRCLPLPSRPATPRQLHACHTRAHVRTLSRTPSLSPRELRA
LSQRYNSLYLCPQSYTCARLAAGGACAAVGAVLGGQVRSALAVLRPPGHHARPGSAGGFC
LFNNVGVAVRHAQRLAGTPLRVLILDWDIHHGNGTQEIFEEDPSVLYVSLHRHDGSFFPG
GAGGSPRRRGRGPGTGFTLNVGWGGPRVGDPEYLAALTRLVLPVACQFGPELVLVSAGFD
AGRGDPLGGCLVSPQTFGLMTHLLGGLAGGRLVLVLEGGYNLAVTAEGVGQCLGVLLGDP
PTLPPSGTPQPVALKALSRTLRAQRGSWSCLQLPRVEPPKEGHGSDDVTSTADDVTGSPP
LDAAIRRLGALQLGDAPGGGAKAGSGAGPPLGHAPAAAAAPCWEEEEELEEGALYAVTPL
LDCPHLGAVAPPPAEGALGDILPPPCGVCGSRRENWLCLSCHQVLCGRYIGGHMLEHGGA
SGHPLVLSLRDLAAWCYPCGGYVTHPVLLPTKTFIYHLKFGTDPPTASF
NT seq 3030 nt NT seq  +upstreamnt  +downstreamnt
atggcggctcccctgagcacagccagcgcggcgcccgctcggcagccgccgggccccctg
cggctgaaccgggaccctcttggccccgcccccgtgacgtcatcacggcgcgcccggcgc
cagcgtcgcgcggggctgcagggtcgcgcggggcggcggctcccccagcagggggcgctg
ctccaggcgcggcggcgcgggcgcgcgcggggccggagggcggggctggaggcggagctt
cagcagctggatttgggggcagaggtcgcagctcccactggaacaggactggtcagtgat
ggaggggacagagccgactgcggggacagccgcccccccgggggtctggccccgctctgg
gcggcgctggaggggctggtccagcgctgcgtccctgtgcagtgccgcccagccaccgat
gaggagctgctgctggtgcacagccccttgttcgtggcgcagctggagccccctgacagc
cccggcctgggggggtcgggaccccgccgggccgtgggggcggcactggcgctgctggag
caggtgctggggggtgccctgcgcaatggggtggccctgatcagcccccaggacccccag
gattcccctgagcccgcggccgtggccgcccgggtggcccagaaacacctcggggtgcag
cgtgtcctgatcgtggattggagcccccggcccggccggagcctccctcggctgttccag
gaggatcccagtgtcctgtacttcggggctcagcggggccgggagcccccccccagccct
ggccacggccccggggaggggttcagcgtggagctgcgctgggagcagcccggtgtcacc
gacggcgattacgtggccgctgccctccacgtcctgctgcccatcgccttccagttccag
ccccagctcgtcctggtcgaggcttcgctggaggatttgggggggtccctgggggtctcc
cctgctgggttctctctcctgacccacctgctctcggccctggggagggggcggctgctg
ctgctgctgcagggggggccggatttgggggcatccccggggggggtgggggccgtcctg
cggaccctgctgggggaccccggggacccccccgggcccatcacccccacccccagcggc
ctggccagcattgcccgcaccctgagcatccaccagcagtactggggctgcctgcagagc
accgagatcgaggaggaggaggaggaggaggaggaggagaaggaagaggaggaagaagcg
gaggcagaagcaggggaagaagaggaggagaacgaggatgaggatgaaggaaaggaggag
ctggagggggatgggaaccccccagagacccccccggagccaccgccaagagcccgagtg
gggttggtctacgacccccgcatggaggagcacaggaacacctgggacagccagcacccc
gagtgcccgcagcgcctgtcgcgggtgctgcagcgcctgcaggagctggggctggcccag
cgctgcctcccgctgccctcccggcccgcgaccccccggcagctccacgcctgccacacc
cgtgcccacgtgcggacgctgtcccggacgccgtcgctgtccccgcgggagctgcgggcg
ctgtcccagcgctacaacagcctctacctgtgcccccagtcctacacctgtgcccgcctg
gccgcgggcggggcctgcgccgctgtgggggccgtgctggggggccaggtgcgctcggcg
ctggccgtgctgcgtccccccggccaccacgcccgccccggctctgccggcggcttctgc
ctcttcaacaacgtgggggtggccgtgcgccacgcccagcgcctggcagggacccccctc
agggtgctgatcctagactgggacattcaccacggcaacggcacccaggagatctttgaa
gaggaccccagtgtcctgtacgtgtccctgcaccgccatgacggctccttcttcccgggg
ggggccggggggtccccgaggcgccgggggaggggtcctggcaccggcttcaccctgaac
gttggctggggggggccccgcgtgggggaccccgagtacctggcggccctgacccgcctg
gtgctgcccgtggcctgccagtttgggccagagctggtgctggtgtcggccgggttcgac
gcgggccggggagaccccctgggggggtgcctggtgtccccccagaccttcggcctcatg
acccatctcctgggggggctggcagggggacggctcgtgcttgtgcttgagggcgggtac
aacctggcagtgacggcagagggggtggggcagtgcctgggggtcctgcttggggacccc
cccacactgcccccctccgggaccccccagccagtggcactgaaggccctgagccgcacc
ctgcgagcacagcggggctcctggagctgcctgcagctgcctcgtgttgagccccccaag
gaggggcacggcagcgatgatgtcacatccaccgccgatgacgtcaccggctctcccccc
ctggacgccgccattcgccgcttgggggcgctgcagctcggggacgcgccggggggcggg
gccaaagctggctcgggggcggggcctccgctaggccacgcccccgcggccgctgccgcc
ccctgctgggaggaggaggaagagctggaggagggagcgctgtacgccgtgacgcccctc
ctggactgtccccacctgggggccgtggccccccctccggccgagggggctctcggggac
atcctgccccctccctgcggggtctgcgggagccgccgcgagaattggctgtgcctgagc
tgccaccaggtgctgtgtgggcgctacatcggggggcacatgctggaacacgggggggcc
tcggggcaccccctggtgctgagcctgcgggacctggcggcctggtgctacccctgcggg
ggctacgtcacccacccggtgctgctccccaccaagaccttcatctaccacctcaaattc
ggcactgacccccccaccgcctccttctga

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