KEGG   Phreatobacter sp. S-12: C6569_04930Help
Entry
C6569_04930       CDS       T05356                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
phr  Phreatobacter sp. S-12
Pathway
phr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:phr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C6569_04930 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phr03400]
    C6569_04930 (ligD)
Enzymes [BR:phr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C6569_04930 (ligD)
DNA repair and recombination proteins [BR:phr03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C6569_04930 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AVO44458
LinkDB All DBs
Position
complement(1028085..1030625)
Genome map
AA seq 846 aa AA seqDB search
MAKAQAADRLGAYRQKRNFAKTREPDGRLEAEAGKAQGGSFVIHKHAARRLHYDLRLEHD
GALWSWAVTRGPSLDPDDKRLAVHVEDHPLSYGGFEGTIPAGEYGAGSVIVWDRGRWTPE
IDPAKAMAKGHIAFTLDGERLKGGWHLVRLKPRKGESRDNWLLMKSKDEAASDRDILAEE
PTSLVSGLTVEEVAEGKPPKTAPGTKIPAGKAGAKKPPGKAAAGPAMKRKVAARAPAFVP
PCLASLKERPAEGKGWIHEVKFDGYRVQAVVAGGEARLLTRTGLDWTERFGGDLAASFGD
LPCESAVIDGEVVVLNDSGVSSFAALQAALSEGRRENMVYYAFDLLHLDGEDLTGEPLVA
RKERLAALIEGADPARLRYSEHFAEPGEIMLAHACRMGLEGVISKRLDAPYHSGRRGDWI
KAKCTRSQEFVIAGYVPSKAHSGRIGSLVVAYHEDDALKHAGRVGTGYTGTVATALKRRL
DGLRAERSPFSGKEGRQKDVVWVEPTLACEVEYRTWTADGLLRQAAFKGLREDKPAGEIV
REDAPAADPVQEERPKRAKKARAPAAPATSVVLSNADKVLWPDRGLTKEGLLAHYGAVWA
RMEPLVVRRPLSLVRAPDGISRHSFFQKHASPGMGKTIRTVKPKGESDALLYVEDFDGIA
ALVQMGVVEIHVWGSTIDDLERPDQVIFDLDPGEGVSMDAVREGALAVRDRLKGIGLESF
VKLSGGKGFHVTVPLTPAADWAAVKGFSHDFARAMAATEPGRYTATLAKKARRGKIFIDY
LRNGRGATAVAPYSTRARPDAPFAIPAIWKDVEGGLEPNAFKVGDALPARDPWTGFRAAA
QPLAAI
NT seq 2541 nt NT seq  +upstreamnt  +downstreamnt
atggcgaaggcgcaagcggccgaccggctcggcgcctatcgccagaagcgcaactttgcc
aagacccgcgagcccgatgggcgccttgaggccgaagccggcaaggcgcagggcggcagt
ttcgtcattcacaaacacgccgcccgcaggctccactacgatctgcgcctcgaacatgac
ggcgcgctgtggagctgggcggtgacgcgcggcccgagcctcgaccccgacgacaagcgc
ctcgccgtccatgtcgaggaccacccgctgagctacggcggcttcgagggcacgatccct
gcgggcgaatacggagccggctcggtcatcgtctgggatcgcggccgctggacaccggag
atcgacccggccaaggccatggccaagggccacatcgccttcaccctcgacggcgagcgg
ctgaagggcggctggcacctcgtgcggctgaagccgcgcaagggcgagagccgcgacaac
tggctgctgatgaagtccaaggacgaggcggcctccgaccgcgacatcctggcggaggag
ccgacatcgctcgtttccggcctgacggtggaagaggtggccgaaggcaagccgccgaag
acggcgcctgggacgaagatccccgccgggaaggcgggtgcgaagaagcctcccggcaag
gccgcagccgggcccgcgatgaagcggaaggtcgcggcgcgcgcgcccgccttcgtgccc
ccctgcctcgccagcctcaaggagcggccggcagagggcaagggctggatccacgaggtg
aagttcgacggctaccgcgtccaggccgtggtggccggcggggaggcgcgcctgctgacg
cgcaccggcctcgactggaccgagcggttcggcggcgacctcgccgcatccttcggcgac
ctgccctgcgagagcgccgtgatcgacggcgaggtggtggtgctgaacgattccggcgtc
tcgtccttcgccgccctgcaggcggcgctgtcggaggggcggcgggagaatatggtctac
tacgccttcgacctgctgcacctggacggcgaggacctcaccggcgagcccctggtggcc
cgcaaggagcggctggcggcgctgatcgagggcgcggacccggcgcggctgcgctacagc
gagcatttcgccgagcccggcgagatcatgctcgcccatgcctgccggatggggctggag
ggggtcatctcgaagcggctcgacgccccctatcacagcggccggcgcggcgactggatc
aaggccaagtgcacccgctcgcaggaattcgtcatcgccggatacgtgccctcgaaagcc
cattcggggcgcatcggctcgctggtggtggcctatcacgaggacgacgccctgaagcac
gcgggccgggtgggaaccggctacacgggcacggtggcgacggcgctgaagcgccgcctc
gacgggctgcgcgcggagcgctcgcccttctcgggcaaggagggacgccagaaggacgtc
gtctgggtcgagccgacgctcgcctgcgaggtcgaataccggacctggacggccgacggc
ctgttgcgccaggccgcattcaagggactgcgcgaggacaagccggccggcgagatcgtg
cgcgaggacgcgcccgccgccgatccggtgcaggaggagaggccgaaacgggcgaagaag
gcgcgcgcgccggccgcccccgctacgtcggtggtgctgtcgaatgccgacaaggtgctg
tggccggacaggggcctgaccaaggaaggcctgctcgcccattacggcgccgtctgggcg
cgcatggagccactggtcgtccgccgcccgctgagcctggtgcgcgctcccgacggcatt
tcccgccactccttcttccagaaacacgcctcccccggcatgggcaagaccatccgcacc
gtgaaaccgaagggcgagagcgacgccctgctctatgtggaggatttcgacggcattgcc
gcgctggtgcagatgggggttgtggagatccacgtctggggctcgacgatcgacgatctg
gagcggcccgaccaggtgatcttcgacctcgatcccggcgagggcgtgagcatggatgcg
gtgcgcgagggcgcactggcggtccgtgaccggctgaagggcatcgggctcgagagcttc
gtcaagctgtcgggcggcaagggattccacgtgacggttccgctgacgccggccgcggac
tgggcggcggtgaagggcttttcccacgacttcgcccgcgccatggccgcgaccgagccg
gggcgctacaccgcgaccctcgccaagaaggcgcggcgcggcaagattttcatcgactat
ttgcgcaacggtcgcggcgcgacggcggtggcgccctattccacccgcgccaggccggat
gctccgttcgccattccggcgatctggaaggacgtggagggcggcctggagccaaacgcc
ttcaaggtgggcgacgccctgcccgcgcgcgacccctggacgggtttcagggccgcggcg
cagccgctggctgccatatga

DBGET integrated database retrieval system