Paraburkholderia hospita: C2L64_08875
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Entry
C2L64_08875 CDS
T05305
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phs
Paraburkholderia hospita
Pathway
phs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C2L64_08875 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phs03400
]
C2L64_08875 (mfd)
Enzymes [BR:
phs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2L64_08875 (mfd)
DNA repair and recombination proteins [BR:
phs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C2L64_08875 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
ERCC3_RAD25_C
HemY_N
Motif
Other DBs
NCBI-ProteinID:
AUT68424
UniProt:
A0A1H6L9Z2
LinkDB
All DBs
Position
1:1977993..1981478
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AA seq
1161 aa
AA seq
DB search
MPDIAASTQSSSTPVALVKAGQRFVFDGTHGSSDALLIARYHLAHKAQVPLLAVVCASAV
DAQRLSQELAFFAPEARVRLLPDWETLPYDSFSPHQDLVSERLATLHDLGEARCDILLVP
ATTALYRMPPASFMAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI
DLFPMGSPLPYRIDLFDDQVDSIRAFDPDSQRSLYPVKDVRLLPGREFPFDEPARTAFRS
RWREVFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFEETATLFHYLPEGAQLAFVGDLDA
AIRRFTADTKQRYNFLSHDRDRPILEPQRLFLSDEDFFTFAKPFARLSLPGNAGGGWAVP
LPNLAIDRHADDPVAALRAWLATTPNRVLFAAESAGRRETIAQLLADNALRPTSADSYGD
WLTSDARFALGVAPLANGFAIPGEGVAILTETELYGPLARRAGRRRQEQASNVDSMVRDL
SELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYQGDSKLYVPVAQLHVISRYSG
ADPESAPLHALGSGQWEKAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYVKFA
ESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAL
LSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVSASIQQINEGTVDIVIGTHKLL
SSDVQFKRLGLVVIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFS
VIATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVP
EARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLA
QLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRG
TGEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPA
DYCGDVQERLSLYKRLANCEHSDAIDGIQEELIDRFGKMPPQAHALVETHRLRLAAKPLG
ISKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIESRSPDFTVRVATV
KETLRALGAPVKGAADRRVAS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacatcgccgcatccacgcaatcctcctcaacgcccgtcgcgctggtcaaggcc
ggccagcgtttcgtgttcgacggcacgcacggctcgtccgacgcgctgctgatagcgcgc
taccacctcgcgcacaaggcgcaggtgccgctgctggcagtcgtctgcgcgagcgccgtc
gatgcacagcggctgtcgcaggaactcgcgttcttcgcgccggaggcgcgggtgcgcctg
ctgcccgactgggaaacgctgccgtacgactcgttctcgccgcaccaggacctcgtctcc
gagcgtctcgcgacgctgcacgacctgggcgaagcacgctgcgacatcctgctcgtaccc
gcaacgactgccctgtaccggatgccgcccgcctccttcatggcggcctacacgttctcg
ttctcgcagggcgaacgtctcgacgaagcgaagctgaaagcgcagctgacgctggccggc
tacgagcacgtgagccaggtcgtgcgacccggcgaatactgcgtgcgcggctcgctgatc
gacctctttccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtc
gattcgatccgcgcgttcgatcccgattcgcagcgcagcctctaccctgtgaaggacgtg
cgcctgctgcccggccgcgagtttccgttcgacgaacccgcgcgcaccgcatttcgcagc
cgctggcgcgaggtgttcgagggcgatccgagccgggcgtcgatctacaaggacatcggc
aacggcgtgccgtcggcgggtatcgaatactatctgccgctgttcttcgaagagacggcg
acgctcttccactacctgcctgaaggcgcgcagctcgcgttcgtcggcgatctggacgcc
gccatccggcgcttcaccgcggatacgaagcagcgctacaacttcctgtcgcacgaccgc
gaccggccgattctcgaaccgcagcgcctgttcctgtcggacgaagatttcttcacgttc
gccaagccgttcgcgcgcctgtcgttgcccggcaacgcgggcggcggctgggccgtgcca
ctgcccaatctcgcgatcgaccgccacgccgacgatcccgtcgccgccttgcgcgcgtgg
ctcgccacgacgccgaaccgcgtgctgttcgccgcggaatcggcgggccgccgcgagacg
atcgcgcaactgctcgcggacaacgcgctgcgccccacttccgccgacagctacggcgac
tggctgacctccgacgcgcgcttcgcgctcggcgtcgcgccgctcgcgaacggcttcgcg
attccgggcgaaggcgtcgcgattctcaccgagacggaactgtacggtccgctcgcacga
cgcgcgggacgccgtcgccaggaacaggcgagcaacgtcgattcgatggtgcgcgacctg
tcggaattgaaggtcggcgacccggtcgtgcattcgcagcacggcatcggccgctatatg
ggcctcgtgacgatggatctcggcgaaggtgaaaccgagtttctgcacctcgaataccag
ggcgacagcaagctctacgtgcccgtcgcgcaactgcacgtgatctcgcgctacagcggc
gccgatcccgaaagcgcaccgctgcacgcgctcggctcgggtcagtgggaaaaggccaag
cgcaaggccgcgcagcagatccgcgacacggcagccgaactgctgaacctctatgcacgc
cgcgccgcgcgcgaaggccatgcgttcgcgctcgaaccccgcgattacgtgaagttcgcc
gagagcttcggcttcgaggaaacacccgaccaggcggctgccattgccgccgtgatcggc
gacatgacgagcggcaagccgatggaccgcctcgtctgcggcgacgtcggcttcggcaag
acggaagtcgcgttgcgcgcggcgttcatcgcggtgatgggcggcaagcaggtcgcgctg
ctctcgcccaccacgctgctcgccgaacagcacacgcagaccttcaccgaccgcttctcc
gactggcccgtgcgcatcgccgagttgtcgcgcttcaagagcacgaaggaagtcagcgca
tcgatccagcagatcaacgaaggcactgtcgatatcgtgatcggcacgcacaagctgctg
tcgtcggatgtgcagttcaagcggctggggctcgtcgtcatcgacgaggaacaccgtttt
ggcgtgcgccagaaggaagcgctgaaagcgctgcgcgccgaagtcgacgtgctcacgctc
accgcgacgccgattccgcgcacgctcggcatggcgctggaaggcctgcgcgatttctcg
gtgatcgcgacggcgccgcaaaagcgcctcgcgatcaagaccttcgtgcgccgcgaggaa
gacggcgtgatccgcgaagccatgctgcgcgaactgaagcgcggcggtcaggtgtacttc
ctgcacaacgaagtcgagacgatcgaaaatcgccggcagatgctcgaagcgctcgtgccc
gaagcgcgcatcgcagtggcgcacggacagatgcacgagcgcgaactcgaacgcgtgatg
cgcgatttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgacgatcatcgaaacgggc
atcgacgtgccgagcgcgaacacgatcctgattcaccgctccgataaattcggtctcgcg
cagttgcatcagttgcgcgggcgcgtcggccgctcgcatcaccaggcgtattcgtatctg
ctcgtgcacgatccgcaagggctgacgaagcaggcgcaacggcggctggaagccattcag
cagatggaagaactcggcgcgggcttctatctcgcgatgcacgacctcgaaattcgcggc
acgggcgaagtgctcggcgacaagcagtcgggcgagattcacgagatcggcttccagctc
tacaccgacatgctgaacgatgccgtcaaggcgctgaagaacggcaaggagccggacctt
acggcacctctggcggcgacgacggagatcaatctgcacgcgcccgccattctgcccgcc
gactattgcggcgacgtgcaggagcgcctgtcgctgtacaagcggctggcgaactgcgag
cacagcgacgccatcgacggcattcaggaagagctgatcgaccgcttcggcaagatgccg
ccgcaggcgcatgcgctcgtcgaaacgcaccgcttgcgtctggccgcgaagccgctcggc
atctcgaagatcgacgcgggcgaagcggtgatcggcttgcagttcattccgaatccgccc
atcgacgcgatgcggatcatcgagatggtgcagaaacacaagcacatcaagctcgcgggt
caggacaagctgcgtatcgaaagccggagtcccgatttcaccgtgcgcgtcgcgaccgtg
aaggaaacgttgcgcgcgctcggcgcaccggtgaagggcgcggcggaccggcgtgtcgct
tcgtaa
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integrated database retrieval system
