KEGG   Paraburkholderia hospita: C2L64_08955Help
Entry
C2L64_08955       CDS       T05305                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
phs  Paraburkholderia hospita
Pathway
phs03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:phs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C2L64_08955 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phs03400]
    C2L64_08955 (ligD)
Enzymes [BR:phs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C2L64_08955 (ligD)
DNA repair and recombination proteins [BR:phs03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C2L64_08955 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AUT68438
UniProt: A0A1H6L8M0
LinkDB All DBs
Position
1:complement(1999948..2002824)
Genome map
AA seq 958 aa AA seqDB search
MADKLDTYQRKRRFDATPEPSGTAARAKRATGAKGANTAARKTAKQHSLSFVIQEHDARR
LHYDFRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPLEYGSFEGSIPEGNYGAGSVI
VWDRGTWEPTGGEAGARDAYKAGKLKFHLNGEKLHGGWTLVRSHMRGSGDKEQWLLIKER
DDDARSEADFDVLEERQGSVLSDAPGARGGMNGTSGSGKAAAGKSKSKEERANASIKATK
AAASRRSKGTPADRPDIVATRNAESLRELAGHPSIEGAVKAKLPAALKPQLATLVDSAPA
GDDWVYEIKFDGYRVLARIDHASKDSVQIFTRAGNDWTAKFSKQVKAIARIGLDDAWLDG
EAVVLDSNGVPSFQALQNAFDAHRPQDITLYLFDLPYLNGYDLRGVPLEQRRAILHALLE
TVDDDTLRFSEGFGFDAGQLLKSACDMQLEGIIGKRRDSYYVSGRSPAWIKLKCRRRQEF
VIGGYSEPAGSREAFGALLLGVYDTKGKLQYAGRVGTGFDAAKLRSIKKELDARETQKMP
FASEPRERSRTPVHWVKPELVAECNFAEWTSDGVVRQASFVSLRSDKPAKQIVHEAPSKG
ADVQQMTEEMNAGQAKTSTAKKRASKTSDVEPTPATKRAKKSGVETRGKAATQSTSKAAT
ATISGVRISHPDRVIDKSTGARKIELAEYYASVASWMLPFLKDRPVALVRAPEDIGGELF
FQKHSQKLAIPNITQHPGLDPDHPPLLTIESEAALVGAAQMGTIELHTWNAVAANIEKPD
RMVFDLDPDPALGWKRMIEAAQLTRELLEELGLASFCKTSGGKGLHVVVPIAKQLGWDEV
KAFTQAVAQHMATALPKHFAAKMGAQNRKGKIFVDYLRNNRGSSTVCAFSLRARPGLGVS
VPLAWDEVPGTTAGDQWNIANLHERLDALKSDPWADYAKTKQRITAAMRRRLDMAEHD
NT seq 2877 nt NT seq  +upstreamnt  +downstreamnt
atggccgacaagctcgatacctatcagcgcaagcgccgcttcgatgcaacgccggagccg
tcggggaccgctgcgcgggcgaagcgtgcaacgggcgcaaagggtgcaaacacagccgca
agaaagaccgcgaagcagcacagcttgtcgttcgtgatccaggaacacgacgcccgacgc
ctgcattacgacttccgtctcgaactcgacggcacgctcaaatcctgggccgtgccgaaa
ggaccgagcctcgatccgtccgtcaagcgacttgccgtgcatgtcgaagatcacccgctc
gaatacggttcgttcgaaggctcgattcctgaaggcaactacggcgcgggatcggtgatc
gtctgggatcgcggcacgtgggaaccgacaggcggcgaagcgggcgcgcgcgacgcgtac
aaggcgggcaagctcaagttccacctgaacggcgagaagctgcacggcggctggacgctg
gtgcgcagccacatgcgcggcagcggcgacaaggaacagtggctgctcatcaaggaacgc
gacgacgacgcgcgcagcgaagccgatttcgacgtgctcgaagagcggcagggcagcgtg
ctgtcggatgcgccgggcgcgcgcggcggcatgaacggcacaagcggctccggcaaagcc
gccgcaggcaaatctaagagcaaagaggaacgcgccaacgcatcgatcaaggcgacgaaa
gccgccgcatcacgcagatccaaaggcacgcccgccgaccgccccgacatcgtcgcgacg
cgtaatgcggaatcgttgcgcgaactggccggtcatccgtcgatagaaggggcagtcaag
gcaaagcttcccgccgcgctcaagccgcaactggcgacgctcgtcgacagcgcgcccgcc
ggcgacgattgggtctacgagatcaaattcgacggctaccgcgtgctggcgcgcatcgat
cacgcttcgaaagattccgtgcagattttcacgcgcgcaggcaacgactggaccgcgaag
ttcagcaagcaggtcaaggcgatcgcgcgcatcggactggacgatgcgtggctcgacggc
gaggcggtcgtgctcgacagcaacggcgtgccgagcttccaggcgctgcaaaacgcattc
gatgcgcacaggccgcaggacatcacgttgtacctgttcgacctgccgtatctgaacggc
tacgacctgcgcggcgtgccgctcgaacagcgtcgcgcgatcctgcacgcgctgctcgaa
accgttgacgacgacacgctgcgcttttccgagggcttcggcttcgacgccggccagttg
ctgaagagcgcatgcgacatgcagctcgaaggcatcatcggcaagaggcgcgacagctat
tacgtgtcgggtcgctcgcccgcctggatcaagctcaagtgtcggcgccgccaggaattc
gtgatcggcggctattcggaaccggcgggcagccgcgaggcattcggcgcgctgctgctc
ggtgtctacgacacgaagggcaagctgcaatacgcggggcgcgtcggcacgggtttcgac
gcggccaaactgcgttcgatcaagaaggaactcgacgcgcgcgaaacgcagaagatgccg
ttcgccagcgagccgcgcgaacgaagccgcacgcccgtgcattgggtgaagccggaactc
gtcgccgaatgcaacttcgcggaatggacgagtgacggcgtcgtgcggcaggcgtcgttc
gtcagcttgcgcagcgacaagcccgcgaagcagatcgtccacgaagcgccgagcaaagga
gccgacgtgcaacagatgacggaagagatgaacgccggacaggcgaagacatcgacggcg
aaaaagcgcgcgtcgaagacctcggatgtcgagccaacgcccgcgacaaagcgtgcgaag
aagagcggcgtggaaacgcgaggcaaggcggcgacgcaatcgaccagcaaggccgccacc
gcgacgatttccggcgtgcgaatttcgcacccggaccgcgtgatcgacaagagcaccggc
gcgcgcaagatcgagctcgccgaatactacgcgtcggtcgcgtcatggatgctgccgttt
ctgaaggaccggccggtcgcactcgtgcgcgcgccggaggatatcggcggcgaactgttc
ttccagaagcacagccagaagctcgcgattccgaacatcacgcagcatccggggctggac
ccggaccatccaccgctgctgaccatcgaaagcgaagctgcgctggtcggcgccgcacag
atgggcacgatcgaactgcatacatggaacgcggtggccgcgaacatcgagaaacccgac
cgcatggtattcgatctcgacccggacccggcgctcggctggaagcggatgatcgaagcg
gcgcagctcacgcgcgaactgcttgaagaactcggcctcgcgtcgttttgcaagacgagc
ggcggcaagggattgcacgtcgtcgtgccgatcgcgaagcagctcggctgggacgaggtg
aaggcgttcacgcaagccgtcgcgcagcacatggcgacggcgctgccgaagcacttcgcc
gcgaagatgggcgcgcagaatcgcaagggcaagatctttgtcgactatctgcgcaacaac
cgtgggtcgagcaccgtctgcgcattttcgctgcgcgcgcgaccggggctgggcgtatcg
gtgccgctcgcatgggacgaagtgcccggcacgacggcgggcgatcaatggaacatcgcg
aatctgcacgagcggctcgacgcgctgaaaagcgacccgtgggccgactacgcaaagacg
aagcagcgcatcacggccgccatgcggcgcaggctggatatggcggaacacgattga

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