Paraburkholderia hospita: C2L64_11770
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Entry
C2L64_11770 CDS
T05305
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
phs
Paraburkholderia hospita
Pathway
phs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2L64_11770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phs03019
]
C2L64_11770
Enzymes [BR:
phs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2L64_11770
Messenger RNA biogenesis [BR:
phs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2L64_11770
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Fe-ADH
RPC3_helical
UTP25
MerR-DNA-bind
Motif
Other DBs
NCBI-ProteinID:
AUT68921
UniProt:
A0A1H6NNZ1
LinkDB
All DBs
Position
1:complement(2600029..2601489)
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AA seq
486 aa
AA seq
DB search
MSDTATTPTNATFDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTG
KTAGFSLPIIQRLLPLASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTSLRSAV
VFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPAERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVA
EGDKTGAVVKLIRDRGLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRTQSERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
FSPNERKQLADIEKLIKRPLDVQRLTVDTPVRHHHDERAAPRRERDDRGGSRRRTTGAHE
RPHGTHHRQQPVDDFFLKPYEPSPSAVSAAAKRDEAPAAPQKPASKQPLAALLGGFGMPR
KTTPSN
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagcaaccacgcctaccaacgcgaccttcgaccagttcggcctgcatgcc
gacattctcaaagccatcgcggaacagggctacacgacgccgacgccgatccaggccgag
gcgatccctgttgtactgggcggccgggacgtgatgggcgccgcgcagaccgggacgggt
aagacggcgggcttttcgctgccgatcatccagcgtctgctgccgctcgccagcacgagc
gcgtcgccggcccgccacccggtccgcgcgctgatcctcacgccgacacgcgaactcgcc
gaccaggtcgccgcgaacgtgcaggcgtacgccaaacacacgtcgctgcgcagcgccgtc
gtgttcggcggcgtcgacatgaatccgcaatcggcggaactgcggcgcggcgtcgaaatc
ctgatcgcgacgccgggacgcctgctcgaccacgtgcagcagaagacggccaatctcggg
caggtgcagattctcgtgctcgacgaagccgaccggatgctcgacatgggctttctgccc
gacttgcagcgcatcctgaatctgcttcccgccgagcgtcagacgctgctgttctcggcg
acgttctcgcccgaaatcaagaagctcgcgtccacgtatctgcgcaatccgcagacgatc
gaagtggcgcgcagcaattcgacggcgaccaacgtcacgcagatcgtctacgaggtggcc
gagggcgacaagacgggcgccgtcgtgaaactgatccgcgaccgcggcctcaagcaggtc
atcgtgttctgcaacagcaagatcggcgcgagccgtcttgcgcgtcagctggagcgcgac
ggcgtggtcgccaccgcgattcacggcgaccgcacgcagagcgaacgcatgcaggcgctc
gacgcgttcaagcgcggtgagatcgaagcgctcgtcgcaacggacgtggcggcgcgcggt
ctcgatattgccgagttgcccgctgtgatcaacttcgatctgccgttcaacgcggaagac
tacgtgcaccggatcggccggacaggccgcgcgggcgcatcgggcgacgcactgtcgctg
ttcagcccgaacgagcgcaagcagcttgccgacatcgagaagctgatcaagcggccgctc
gacgtgcagcgtctgaccgtcgatacgcccgtgcgtcatcaccacgatgagcgcgccgcg
ccgcggcgcgaacgcgacgatcgcggcggcagccgccgccgcacgacgggcgcgcacgag
cgtccgcatgggacgcaccatcgtcagcaacctgtcgacgatttcttcctgaagccgtat
gagccgtcgccttcggcggtgtcggctgctgccaagcgcgatgaagcgcctgccgcgccc
cagaagcccgcatcgaagcagccgctcgccgcgctgctgggtggtttcggtatgccgcgc
aagacgacgccttcgaactga
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