Pediculus humanus corporis (human body louse): Phum_PHUM082700
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Entry
Phum_PHUM082700 CDS
T01223
Name
(RefSeq) poly A-specific ribonuclease PARN, putative
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
phu
Pediculus humanus corporis (human body louse)
Pathway
phu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Phum_PHUM082700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phu03019
]
Phum_PHUM082700
Enzymes [BR:
phu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
Phum_PHUM082700
Messenger RNA biogenesis [BR:
phu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
Phum_PHUM082700
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
Cbl_N
Motif
Other DBs
NCBI-GeneID:
8231482
NCBI-ProteinID:
XP_002423735
VectorBase:
PHUM082700
UniProt:
E0VCB1
LinkDB
All DBs
AA seq
550 aa
AA seq
DB search
MEVTRKNFDEVLSTLPDVFNKAQFLAIDTEFTGLKVEGANNNNNYYDEFDDLYLKNRLKA
ETFMAIQFGIVAFFYDEKSKKYTHQGFNFYIYPSTHSDVNFTCQSKSIEFLAKNGFDFNT
LFLHGIPYLKESEMAKLLDRLQEKHDRISSSENFKIIETPPEHSELINKILNEIDEVLKE
KTKKKITIEKNNSYIRRLIYSAVEAKYGKKILLESNKNETMTVFVGYSPEEIKNLREENF
SNEKKKILNESGFTRVIKLMIDSKKLIIGHYLLLDILFTIKQFLSPLPNSYSEFKELLHF
LFPKIIDTKYMASTHDFKGLKDTSLPNVVEYFNTLGKIPDVSTNDNEQGYTLTEKKFHEA
AYDAYMTGLAFLGISNSLESLKVFENLPDSSFLKPYLNKLKIQRIFDIHCMNIGGKDEEP
DRTGVYHLSFPKEWKREHISELFVNCGYISISWINDTSAFVKVNEEHLIEVKKIISNSNS
TYNLRTYNDFRALSNKNADDKVNKKLKIDNVTNNTHESSNNTDKKVLSKKRQIEDLGEVI
ARPEKRKCTS
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcacaagaaagaattttgatgaggttttatcaacattaccagatgtatttaac
aaagctcaatttttggctattgatactgaatttactggattgaaagtagaaggagcaaat
aataataataattattatgatgagttcgacgatttatacttgaaaaaccggctaaaagca
gaaacttttatggctatacagtttggaatcgtagcatttttttacgatgaaaaatcaaaa
aagtacacacatcaaggatttaatttttacatttatccatctactcattcagatgttaat
tttacttgtcagagtaaatccattgaattccttgctaaaaatggatttgactttaataca
ttgtttttacatggtattccttaccttaaagaatctgaaatggcaaaactactagacagg
ttacaggaaaaacatgataggattagttcatcggaaaattttaaaataattgaaacccca
cctgaacactcagagttaattaacaaaatattaaatgaaatcgatgaagttttaaaagag
aaaactaaaaaaaaaattacaatcgaaaagaataacagttatataagaagactaatttac
agtgctgtcgaggcaaagtatggtaaaaaaatattattagaatctaataaaaatgaaacc
atgactgttttcgtcggttacagtcctgaagaaattaaaaatcttcgagaagaaaatttt
tcaaatgaaaaaaaaaaaattttaaacgaatcaggttttactcgagtgataaaattaatg
attgactcgaaaaagctaataattggtcattatttgctgttggatattttatttacaatt
aaacaatttctttctcctctgccgaattcttattcagaatttaaggaattattgcatttt
ttatttcctaaaattatcgataccaaatacatggcatccactcatgattttaaaggtttg
aaagatacttctttgcctaatgtagtcgaatattttaatactctgggaaaaatacctgat
gttagtacaaatgataatgaacaagggtataccttaactgaaaaaaaatttcatgaagca
gcatatgatgcttacatgactggacttgcttttttaggaatatcaaattctttagaatca
ttgaaagtttttgaaaatttaccagattcatcatttttaaaaccttatcttaacaaactt
aaaattcaaagaatatttgatattcattgtatgaatatcggtggaaaagatgaagaacct
gatagaaccggagtttatcatttaagttttcctaaagaatggaagagagaacatatatct
gaactgtttgttaattgtgggtacatttcgatctcatggataaatgacacttcggcattt
gtcaaagttaacgaagaacatttaattgaagttaaaaaaatcatttcgaattcgaattct
acgtataacttacgtacttacaatgactttcgtgcgttaagtaataaaaatgctgacgat
aaagttaataaaaaattaaaaatcgataacgttacgaacaatacacacgaatcttcaaat
aataccgataaaaaagtattatcgaaaaagagacaaattgaagatttgggagaagtaatt
gctaggccagagaaaagaaagtgcacatcttag
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