Pangasianodon hypophthalmus (striped catfish): 113527069
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Entry
113527069 CDS
T05759
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03420
Nucleotide excision repair
phyp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
113527069 (ercc4)
03460 Fanconi anemia pathway
113527069 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyp03032
]
113527069 (ercc4)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113527069 (ercc4)
DNA replication proteins [BR:
phyp03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
113527069 (ercc4)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
113527069 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC4
AmiA-like
Motif
Other DBs
NCBI-GeneID:
113527069
NCBI-ProteinID:
XP_026770366
LinkDB
All DBs
Position
Unknown
AA seq
894 aa
AA seq
DB search
MAGALLEYETEMFLSLFSTDGLLVAAEGLGIDRILLHFMKVYSEEGSLVLLLNTTTPEQE
FFTEQLRAEGVSHLPQTINSDIQSNERYHVYTQGGVLYVTSRILVVDFLTDRIPAHLISG
ILVYRAHKIIESCQEAFILRLYRQKNKTGFIKAFTDKATAFSTGFCQVERVMRNLFVKKL
FLWPRFQASVNSVLDRHKPDVVELHVHLTPAMRAIQSSILDIMNACLKELKRYNPTLEAE
DLSLENTLGSAFEKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLLYLTQYDCVTFLNLL
ESLRSSQKNFGSNSGWLFLDSSTSMFVNARSRVYRVPESKKKLKVGEVEEKPNASVPLKR
ELVLEKNPKWEALTEVLQEIEKEMSSSEHEPGRVLICASDDRTCAQLKEYIRKGADSLLI
RLYSRTIGKEECVTVPEKTKQGNKRDEGKVPKGKKPRAKNTKSGTKKQRASLTLTQMVGQ
QKEAEVEQMGSSGDEGEQDEKQDVKDEDVLPNLKSDSYYCVLQEPMMVLHPLKGCSDPYS
LTRVLKEVEPMFVVLYDAELSFVRQLEVYKASRPGKPLRVYFLIYGGSTEEQRYLTALRK
EKQAFEHLIREKASMVVPEEREGRGDTNLDLDRSHEPAHAAADTRKAGGQEVVKEPSRVI
VDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPEICVERKSVSDLIGSLQSGRLYTQC
LSMSRFYRRPVLLIEFDPAKPFSLVARSELRQEISANDITSKLTLLTLHFPRLRLLWCPS
PHATAQLFQELKHARPEPDAITAQAITAESETVEDSGDLYNPGPYDILLRMPGVNVKNIR
GLIKHVASLAELLTLSQEKLSEILGSASNARQLHEFLHNPMDVASVQKNKQMKY
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcgctgcttgagtacgaaacggaaatgtttctgagcctcttcagcacggat
ggtttactggtcgctgcagaaggactcggtattgaccgcattttgttacacttcatgaag
gtttattcagaggaaggcagtctggtgctgctgctgaacacaaccactcctgagcaggag
ttctttacagagcagctgagagctgaaggagtgagccaccttccccagaccataaacagt
gatatacagagcaatgaacgctaccatgtatacacacaagggggagtgttgtatgtgacc
agccgcatcctggtggtggatttcctcactgacagaattcctgctcacctcatctcagga
atcctcgtctaccgtgcccataagatcattgagtcatgtcaagaggcctttatcttgagg
ctgtaccgacaaaagaacaagaccggcttcatcaaagctttcacagacaaggccactgct
ttttctactggcttctgtcaagttgagcgagttatgaggaatctctttgtgaagaagctc
tttctctggcctaggttccaagcctcggtgaacagtgtactagacagacacaagcctgat
gtggtagagctgcatgtgcatttgacgccagcgatgagggccatccagagctccattctg
gacatcatgaatgcctgtttgaaggagctcaagcggtacaaccccactctggaggcagag
gacctctcgctggagaatacactgggcagtgcctttgagaaaaccattcgccattacctt
gatcccttgtggcatcagctgggcgctaagaccaaatctctagtgcaggacctgaagatc
ttgcgaactctgttgctctacctcacgcagtacgactgcgtcactttcctcaacctgctg
gagtccctgcgttccagccagaaaaactttggcagcaattcaggatggctgttcctggac
tccagcacgtcaatgtttgtgaatgcccgtagccgtgtgtatcgcgttcctgagtcaaaa
aagaaactcaaagttggtgaagtggaagaaaaaccaaatgcctctgtacctttaaaaaga
gagcttgtgcttgaaaagaatccgaagtgggaggctctgactgaggtgctgcaggagatt
gaaaaggaaatgagcagctctgagcacgaaccaggccgggtgctgatatgcgccagtgac
gacaggacgtgtgctcagctgaaggagtacatccggaaaggtgctgattctctactcatc
cgcctttactcacgcactattggtaaagaagagtgtgtaacagtgcccgagaaaactaaa
caaggtaacaaaagggacgaaggaaaggtgcccaagggcaagaagccccgagccaaaaat
accaaaagtggcacaaagaaacagcgagcttcactgacactcacacaaatggtggggcag
cagaaagaagctgaggtggaacagatgggcagcagtggagacgagggagaacaggatgaa
aagcaggatgtgaaggatgaagacgttcttccaaatcttaaatcagattcttactattgt
gttctccaagaacccatgatggtccttcatccgctgaaaggatgctcggatccgtacagt
ctaacgcgtgtgttaaaagaggtcgagcccatgtttgtggtgctgtatgatgctgaactc
agctttgtgcgccagctggaggtttacaaagccagcaggccaggcaaacctctcagggtg
tattttcttatttacggtggctccacagaggagcagaggtacctcactgctctgcgtaaa
gagaaacaagcatttgaacatctgataagagaaaaggccagcatggttgttccagaagag
agagaaggcagaggagacacaaacctggacctggatcgtagtcatgaacctgctcacgct
gctgcagacactcgcaaagcaggtggacaggaggtagtcaaagagccgtcccgagtcatc
gtagacatgcgggagttccgcagcgagcttccttccctcctgcaccggcgggggctcgac
atcgagcctgtcaccctggaggtgggagactacatcctgactcctgaaatctgtgtggag
cgcaagagcgtgagtgacctgatcggctcgctgcagagcggccgcttgtacactcagtgc
ctctccatgagccgcttctaccgccgacccgtgctgctcatcgaattcgacccggccaag
ccgttctcactcgtggcccgtagcgagctgcgtcaggagatctcagccaacgacatcacc
tccaaactgaccctcctgactctccatttcccccggctgaggctgctctggtgcccatca
ccccacgccaccgcacagctctttcaggaactcaagcatgctcggcctgagcctgatgcc
atcactgcccaggcaattacagcagaatcagagacggtggaagattcaggagacctgtac
aaccccgggccttacgacatcctgctgcgtatgcctggagtgaacgttaaaaacataagg
ggactcattaaacatgttgccagcctggctgagctgctcactctgagccaggaaaagctg
agtgagattctgggcagtgctagtaatgccaggcagctccatgaattcctacacaatccc
atggatgtggcttcagttcagaagaacaaacaaatgaagtattag
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