KEGG   Pangasianodon hypophthalmus (striped catfish): 113535334Help
Entry
113535334         CDS       T05759                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:phyp01009]
    113535334 (hdac6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phyp03019]
    113535334 (hdac6)
   04131 Membrane trafficking [BR:phyp04131]
    113535334 (hdac6)
   03036 Chromosome and associated proteins [BR:phyp03036]
    113535334 (hdac6)
Enzymes [BR:phyp01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     113535334 (hdac6)
Protein phosphatases and associated proteins [BR:phyp01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     113535334 (hdac6)
Messenger RNA biogenesis [BR:phyp03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     113535334 (hdac6)
Membrane trafficking [BR:phyp04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    113535334 (hdac6)
Chromosome and associated proteins [BR:phyp03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     113535334 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP
Motif
Other DBs
NCBI-GeneID: 113535334
NCBI-ProteinID: XP_026784384
LinkDB All DBs
Position
Unknown
AA seq 1088 aa AA seqDB search
MDSTSDQTPKGSKRSPKKTPQSSGKRESSKRSQKPSLQEARNKGRRDRGKAEEEMTNKLK
NMGLHDKLKATGTGLVYSDVFSRYRCLWDSSHPECPERVTAIVGMMETEGLLSRCVQVET
RAASEEELSLVHTKEYIDLMKSTQTMTEEELKCVSDRYDSVYLHPDSFSCACLAAGSVLQ
LVDKVMTSELRNGFAVCRPPGHHAQAEQMNGYSMFNNVAVAACYAQKRHGVQRVLIVDWD
VHHGQGIQYAFQEDPSVLYFSVHRYEEGSFWPHLPEGDSSVVGSGQGEGYNINVPWNKTA
MEDGDYVSAFQRILLPVAYEFQPQLVLVAAGFDSVAGDPKGEMCASPQCFSVLTHMLMGL
AEGRIVLALEGGYNLQATAEAACASLRSLLGDPCPHLSTPGAPSESALKSISKTVSALYP
FWTSLQTLEGGPLSEAEPLPSAVCVEKLESCVQVTGLVYDERMMEHHNMWDSHHPELPQR
IFRIFSHHEDLGLVERCRRIPARLATEEELALCHGSQHIATIKSTEQMKPRDLNRLGDEY
NSIYISKESYKCALLAAGACFNVAQSILTGQVRNGVAIVRPPGHHAERDTACGFCFFNTA
ALTARYAQTITHNALRVLILDWDVHHGNGTQHIFEDDDSVLYISLHRYDEGSFFPCSEDA
DYDKVGRGKGAGYNVNIPWNRTKMGDPEYLAAFHHVVMPIAREFAPELVLVSAGFDAARG
DPLGGYQVTPECYAHLTHQLLSLAAGRVLVILEGGYNLNSISTSMAMCTSMLLGDAPPLL
PPLPPPHPSAAISINNVLRAHAPYWRSLRIQIPESLRLSLPSPKPKIKHTPAGKGKNSPA
QVTPQQQHQRTPVTTSPASPPTDQEDSGLDELTQGLRSLDLSTSTISASSSPASVPVGGA
RPKVKPSPQRDSSAVQEVLSVGVIERGIEDGDVKAESTPIKQEKQSVPQTAEESDAGAVC
DQESPALEGACGYTKKSIFELVCGAVDLAGDTMYVVDPLAWCPHLESVRPVPAGGIDVFR
PCEECGAETENWICLCCYKVLCGRFVNEHMVAHGQISSHPLVLSFADLSVWCYSCESYVH
NKVGAYEL
NT seq 3267 nt NT seq  +upstreamnt  +downstreamnt
atggattctacatcagatcaaactccgaagggttcgaaacgctctccaaagaaaacgcca
cagagctccggcaagcgggaaagcagcaaacgcagccagaaaccaagtctccaggaggct
agaaataaaggtagaagggaccgaggcaaagcagaagaggagatgaccaacaaactcaaa
aacatgggtttgcatgacaagctgaaggcaactggaactggcctagtttactccgatgtc
ttttcccgttatcgctgcctgtgggactccagtcaccccgagtgtccagagagagtgacc
gctatagtggggatgatggagacggaggggctgctgtctcgctgtgtgcaggtggagacg
agagctgcatcagaggaggaactttctcttgttcacacgaaggaatacattgatctcatg
aagtccactcagacgatgacggaagaggagctgaagtgtgtctctgatcgctatgactcc
gtctacctccatcctgactctttctcatgtgcctgtctagctgccggctctgtcctccag
ctggtcgacaaggtgatgacatcggagctacgcaatggctttgccgtgtgcaggcctcca
ggacatcacgcccaggctgagcagatgaacggatactccatgtttaataacgtagcagtg
gcagcgtgttacgctcagaaacggcacggcgtccagcgggttctgattgtagactgggat
gtacatcatggtcagggaatccagtacgccttccaggaggatcccagtgtcctgtatttc
tccgtgcatcggtatgaggagggctcgttctggcctcacctgcccgagggagacagcagt
gttgtgggttcaggacaaggcgagggctacaacatcaacgtgccctggaacaagacagcg
atggaggacggagattacgtctcagcattccagagaattctgctgcctgtagcctatgag
tttcagcctcagcttgtgttagtagccgctggctttgactctgtggctggtgatcccaag
ggtgagatgtgtgcgagtccccagtgtttctctgtactgacccacatgctgatgggtcta
gccgagggccgaattgtgctcgctttggagggaggctataacctgcaggccacagcagag
gcagcttgtgctagtttgaggtcactcttgggtgacccctgccctcatctgagcactcca
ggagctccgagtgagagtgctctgaagtccatctcaaagacagtttctgctctgtatcca
ttttggaccagcctgcagactctggagggcggccctctttctgaggcagagcccttgccc
tcagccgtgtgtgtcgagaaactggaatcctgtgtccaagttactggactcgtttatgac
gagcgtatgatggagcatcacaacatgtgggacagccatcaccctgagctccctcagaga
atcttccggatcttctcccaccatgaggatttggggctggtggagcgttgccggcggata
ccggctcgtttagccacagaggaggagctcgcgctttgtcacggatcacagcacatcgct
acgataaagagcaccgagcagatgaagcccagagacctgaacaggctcggagacgaatat
aattccatctacatcagtaaagagagctataagtgtgcactactggcagctggggcatgt
ttcaatgtagctcagtccatcctcactggtcaggtgaggaacggggtggctattgtacgt
ccccctgggcatcacgcagagagagacaccgcctgcggcttctgcttcttcaacacggct
gccctgaccgcccgctatgctcagaccattacccacaatgccctgcgtgtcctcatcctt
gactgggacgtgcaccatggcaacggcacccaacacatctttgaagatgatgacagtgtg
ctctacatctctctccatcgctatgatgaaggctcattcttcccctgctcagaggacgcc
gactacgataaagtgggccgagggaaaggtgcgggttacaacgtcaacataccctggaac
agaaccaagatgggcgacccagaatatctagcggccttccaccatgtggtgatgccgata
gcacgagagtttgctccggagctggtgctggtgtcggccgggtttgatgccgctcggggt
gatccattaggggggtaccaggtgaccccggagtgctacgcccacctcacacaccagctg
ctgagtctagcagcaggacgagtgcttgtcattttagagggaggttataacctcaactcc
atctccacatccatggccatgtgcaccagcatgctcctgggtgacgcgcccccgctgctg
cctcctctgccccccccgcaccccagcgccgccattagcatcaacaacgtcctgcgagca
cacgccccctactggagatctctcagaatacagattccagagtctctacgtttgtccttg
ccttctcctaaacccaaaatcaagcacacgcctgcaggaaaaggcaaaaattctcctgct
caggtcacccctcaacagcagcaccaacgtaccccagtgacgacttcaccagcatcgccc
cctactgatcaggaggactcggggctggacgagctcactcaaggcctgcgctctctggac
ctgagcacatctaccatatctgccagttccagccccgcctctgtccctgtgggcggggct
agacctaaagtgaagcccagcccacagagggactcctcagcagtgcaggaggtgttgtct
gttggagtgatagaaagaggtatagaggatggtgatgtaaaagctgagtccacgcccatc
aaacaggagaaacagtcagtaccacagacggcagaagaatcggacgctggggccgtgtgt
gatcaggagagtcctgcgctggagggagcgtgtggttacacgaagaaatccatcttcgag
cttgtgtgtggagccgtggacctggctggggacacgatgtacgtggtggaccctttggcg
tggtgcccacacttggagtcagtgcgtccagtgcctgcagggggcatcgacgtgttccgg
ccgtgtgaggagtgcggcgccgaaacggagaactggatctgcctctgctgctataaggtt
ttgtgtgggcgttttgtgaacgagcacatggtggcccatggtcagatatcctctcaccct
ctggtcctgagctttgctgatctatcagtgtggtgctactcctgcgagtcctacgtccac
aacaaggtgggtgcatatgagctctga

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