KEGG   Pangasianodon hypophthalmus (striped catfish): 113537759Help
Entry
113537759         CDS       T05759                                 

Gene name
lig4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    113537759 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phyp03400]
    113537759 (lig4)
Enzymes [BR:phyp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     113537759 (lig4)
DNA repair and recombination proteins [BR:phyp03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     113537759 (lig4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT_2 BRCT RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 113537759
NCBI-ProteinID: XP_026788197
LinkDB All DBs
Position
Unknown
AA seq 918 aa AA seqDB search
MDGSSKGKTAEETSKSDAASKTSVAAQVPFLDLCTVLENIQKAKHRPDKSKCLKDFIDSW
RRFHAALHKDNPDTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIEVLGLPKSGPEA
NKLLNYRAPTTSKGDSGDFALTAYFVLKKRCTSRGNLSIKEVNDFLDSVAMNNASKQKDL
VKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETVLQVFHSDAPELYNVTTALDRVCR
QLHDPSISLNEVSIGLFSAFKPMLAAIANIRQVEKQMGNQPFYIETKLDGERIQLHKDGD
VYKYYSRNSFEYTQQFGASPLEGSLTPFIHNVFKSHVVNCILDGEMMAYNPTTETFMQKG
SKFDIKRLVEDSDLQTCFCVFDVLLVNDQKFGNEPLKKRYDTLQTVFTPVKGRIQLVQYT
EAKTRQEVINALNEAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLI
VGGYWGKGRRSGMLSHFLCAVAETPSPGEKPTVFHTLCRIGSGYTMKELYELGLKLAEHW
KVYRKSSPPAGILCGTEKPEVYIEPRNSVIIQVKAAEIVTSDMYKTNCTLRFPRIERIRE
DKEWYECMTLDEISQFRDKASGKLASRHLHLQEDEPEKKKRKLASKPKKTIGIVDHFKSQ
DLSTVTKETDMFEDVEFCVMSGSNTHSKAELEKAVARGGGIVVQNPGKDTYCVIAGVENV
RVKNLIGSNQHDVVWASWLLECLDRKQVLPWQPRHMIHMSPSTREHFAEEYDCYGDSYYV
DTDEQQLRDVFSRMEPVEVDAVSIASIEQKYGFDDLPTSMFRPYRAYFDRCADLGNPESL
IKGTCLNFRALEFRFHGGTVVERLEEGITHVVMAGEERLLDIRTHRRLFTKKFKIVRETW
VTDSIKAGHVLNDNDYLV
NT seq 2757 nt NT seq  +upstreamnt  +downstreamnt
atggacggctcatccaaaggcaagacagcagaggaaacatccaaaagtgacgctgcatct
aaaacatctgtggctgcgcaagtgccatttcttgacctgtgcactgttctcgagaatatc
cagaaagccaaacatcggccagacaagtccaaatgcttaaaggatttcatagattcatgg
agaaggtttcatgcagctcttcacaaagataatcccgacactacagattcattttaccca
gccatgcgtcttatcgtgcctccttttgaaagggagagaatggcctatggtatcaaagaa
aacatgttagccaaactctacattgaggtcttaggtcttccaaaatcagggccagaggct
aataaacttctcaattacagagcccctactacatccaaaggagactctggagactttgct
cttacagcttattttgtcctcaaaaagagatgcacaagccggggtaatctgagtatcaaa
gaggtcaatgacttcttggactcagtagctatgaataacgccagcaaacagaaggacctt
gtgaagaaaagccttttacatttgattactcaaagctcagctttggaacagaagtggctt
attcgtatgatcctgaaagacatgaaacttgggattagcaaggagaccgttctccaggtt
tttcactcagatgctccagagctctacaatgtcactacagccttggacagggtctgcaga
cagctacatgacccctctatttccttgaatgaggtatccatcggcctgttttctgccttc
aaacccatgctggcggctatcgccaacatccgccaagtggagaaacagatggggaatcag
cccttctatattgagaccaagctggatggtgagcgcattcaacttcataaggatggggat
gtatacaaatactacagccgtaactcatttgaatacacacaacagttcggggcctcacca
ctagagggttctctcacaccattcatccacaatgtctttaaatctcatgttgtcaattgt
atcttggatggagagatgatggcttataaccccaccacagagactttcatgcaaaaaggc
agcaaatttgatatcaagcggttggtggaggactctgatttacagacatgcttttgtgtg
tttgatgtcctgcttgtcaatgaccagaagtttggaaatgagcctctcaagaagcgttac
gacactctccagacagtcttcacacccgtcaaaggccggatccagctggtacagtacact
gaagccaaaaccaggcaggaagtgataaatgcccttaatgaagctattgacaaccgtgaa
gaaggcatcatggtcaaagaccccttgtccatctacaagccagataaacgtggtgaaggc
tggctgaagatcaaacctgaatatgttgatggcctgatggatgaattggatttgctaata
gtgggaggctattgggggaaaggcagacggagtggaatgttgtcccactttctctgtgct
gttgctgaaactccaagtcctggagagaagccaacagtgttccatacactctgtcgaatt
ggatcaggctacaccatgaaggagctctatgagcttggcctgaaactggccgaacactgg
aaagtttatcgcaagagtagtcctccggcaggcattttgtgtggaacagagaagccggag
gtttacattgagccaagaaactcagtgatcattcaagtcaaagctgcagagattgttacc
agtgacatgtacaaaactaattgcactctgcgattccccaggattgagaggatccgagag
gacaaagaatggtatgagtgcatgaccttggatgagataagtcagttccgtgataaagca
tcgggtaaactggcatccaggcaccttcacctccaggaagacgagccggagaagaagaaa
cgcaagctcgcatccaagcccaaaaagaccattggcattgttgaccacttcaaatctcaa
gacctgtccactgtcaccaaagagacagacatgtttgaagatgtggaattctgtgtgatg
agcggaagtaatacgcattcaaaggccgagcttgaaaaggctgtggcccgtggcggaggc
attgtagtccagaaccctggaaaggacacgtactgtgtgattgcaggtgttgagaacgtg
cgggtaaagaacctcattggttcaaaccaacatgacgtagtatgggcttcctggctcctg
gaatgtctggacaggaaacaggtgctaccatggcaaccacgacacatgatccacatgtcc
ccttccacaagggaacactttgctgaagagtatgattgctatggagacagttactacgtc
gacacagatgagcagcagctgagggatgtcttcagcagaatggagcctgttgaagtggat
gcagtatccatagcttcaatcgagcagaagtacggctttgatgacttgcccactagcatg
ttcagaccttaccgtgcctactttgaccgatgtgctgatttgggcaatccagaaagtctt
attaagggtacatgtctgaactttcgggctcttgagtttcgctttcatgggggcacagta
gtagaaagactagaagaaggcatcacacatgtagtcatggcaggggaagagagattattg
gacataaggacacatagacgcctctttactaagaagtttaagatcgttcgagaaacatgg
gtgactgattctattaaagcaggacacgtacttaatgacaatgattaccttgtgtaa

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