Pangasianodon hypophthalmus (striped catfish): 113540900
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Entry
113540900 CDS
T05759
Symbol
tent4b
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD5
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113540900 (tent4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113540900 (tent4b)
03016 Transfer RNA biogenesis [BR:
phyp03016
]
113540900 (tent4b)
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
113540900 (tent4b)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113540900 (tent4b)
Transfer RNA biogenesis [BR:
phyp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113540900 (tent4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_assoc
NTP_transf_2
Polbeta
PAP_NTPase
TUTase
Motif
Other DBs
NCBI-GeneID:
113540900
NCBI-ProteinID:
XP_026793366
LinkDB
All DBs
Position
Unknown
AA seq
696 aa
AA seq
DB search
MDPRIAWFQPEQRGPANSLWMQIWETTQGLGNLYFHGNGNGGGNSNSSGGAAAAAAAGGG
GGGGGYSSSSSPKPTGDGAVAADGSAAPDCGEQKHRGMSGEIAEQRDFIPLESNNIVINN
NHHNQRSAAAAAAGRGGGGGGGGGVGAWSGAQDAAAQRNKRKRENKASTFGFNRSLLLNG
SSGPDADLYTGTPWKQRNYSGGIVGLHEEIKDFYEYMSPRPEEEQMRLEVVDRIQRVIKD
LWPSADVQVFGSFSTGLYLPTSDIDLVVFGNWETLPLWTLEEALRKRNVADENSIKVLDK
ATVPIIKLTDAHTEVKVDISFNVHSGVKAANLIKDFKKKFPVLPYLVLVLKQFLLQRELN
EVFTGGIGSYSLFLMAVSFLQLHYREDVCSPNSNMGVLLIEFFELYGRHFNYLKTGIRIK
DGGSYVAKDEVLKGMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVILSHA
VSPIAKYYPNYKSESILGRIIRVTREVVEYRDWISEHWGGQSQSEAALNCNGNDVTLLVE
PQQLDECNNNLTDEIVVLPPASRSKASSNSSSPPPSSPSSPSSSSSPSPSSTTSSDADSD
GTPCKTVKQLPGRGSGPHRDNTERNLANHRAQSHPMTTPTTGHKGSKSRQFRPSKSSPAQ
QSVSNSKSHQSSKAHHHTTGKRRKNQREAAHEDLCR
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggatcctagaatcgcctggtttcagccagaacagcgcggacccgctaacagcctgtgg
atgcagatttgggagacgacacagggcctcggtaatttgtactttcacgggaacgggaac
ggaggcggcaacagcaacagcagcggaggagcggcggcggcagcagcagcaggaggtgga
ggtggaggaggcggatacagctcgagctcgagccccaagccgaccggagacggtgcggta
gcggcggacggcagcgcggctcccgattgcggcgagcagaaacaccgggggatgtcggga
gaaatcgcggagcagcgggacttcattccgctggaaagcaataatattgtcatcaacaac
aaccaccacaaccagcggagtgcagcagcggcagcagcgggccggggcggtggcggtggc
ggcggcggcggagtgggagcctggagcggggcgcaggacgccgcggcgcagcgcaacaag
cgcaaacgcgagaacaaggcgagcactttcggcttcaaccgcagcctcttactgaacgga
tcttccggcccggacgcggacctgtacacgggcacgccgtggaaacagagaaactactcc
gggggaatcgtggggctccatgaggagattaaagatttctacgagtacatgtctcctcgg
ccggaggaagagcagatgaggctggaagtcgtcgacaggatccagagagtcatcaaggac
ctatggcccagtgcagacgtccaagtgttcggcagtttcagcaccggcctgtatttgccc
acgagtgatatagacctggtagtgttcggaaactgggagacacttcctctttggacgctg
gaggaggccctgcgcaaaaggaacgtcgcagacgagaattcgatcaaagtgctggataaa
gcaacggttccgattatcaagctgacagacgctcacactgaggtcaaagtggacatcagt
tttaacgtgcacagcggcgtgaaggctgccaacctcatcaaagacttcaaaaagaaattc
cccgtgctgccgtacctggttctggtgctgaaacagttcctgctgcagagagagctgaat
gaggtgtttactggaggcattggatcctacagcctgtttctcatggctgtcagtttccta
cagctacactacagagaggatgtgtgcagtcccaactccaacatgggcgtcctgctcatc
gagttcttcgaactgtacggccgccattttaactacctgaagacgggcatcaggattaaa
gatggcggctcgtatgtggccaaagacgaggtgctgaaaggcatgctagacggatacagg
ccgtccatgctgtacatcgaggatccactgcagccgggcaatgatgttggaaggagctca
tatggggccatgcaggtgaaacaagcattcgattacgcgtatgtgattctgagccacgcc
gtctctcccatcgccaagtactacccgaactacaaatctgaaagtattctgggtcgaata
atccgcgtcacacgggaggtagtcgagtaccgcgattggatcagtgagcactggggcggg
cagtcacaaagcgaggcggccctcaactgcaacggaaatgacgtcaccctcctggtggag
cctcagcagctcgacgagtgtaacaacaacttaactgacgagatcgtcgtccttcctcca
gcttcacggagtaaagcgtcctctaactcctcctccccaccgccttcctcaccttcatca
ccgtcttcatcctcatcgccatctccttcctccacgacgtccagtgatgcagattcggac
ggaacgccgtgcaagacggtgaaacagctgcctggccggggctctggtcctcaccgagat
aacacagagaggaatctggccaatcacagagctcagagtcatcccatgaccacacccact
acaggccacaaaggcagcaagagtcgacagtttcggccgagcaaaagctccccagcccaa
cagagcgtctctaacagcaagagccaccaaagcagcaaggcccatcaccacaccaccggc
aagagacggaaaaaccagcgggaggcagcgcatgaggacctgtgcagatag
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