Pangasianodon hypophthalmus (striped catfish): 113542768
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Entry
113542768 CDS
T05759
Symbol
kdm2a
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
113542768 (kdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113542768 (kdm2a)
04121 Ubiquitin system [BR:
phyp04121
]
113542768 (kdm2a)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113542768 (kdm2a)
Enzymes [BR:
phyp01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
113542768 (kdm2a)
Transcription factors [BR:
phyp03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
113542768 (kdm2a)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
113542768 (kdm2a)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
113542768 (kdm2a)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
113542768 (kdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
Cupin_8
F-box
PHD
LRR_4
Motif
Other DBs
NCBI-GeneID:
113542768
NCBI-ProteinID:
XP_026796313
LinkDB
All DBs
Position
Unknown
AA seq
1274 aa
AA seq
DB search
MEETRYSKRLRTGTRRRYQDDGISDDEIEGKTTFDLEEKLESSDFNSDLVKIMDGKDFTF
EYIQREGLRDPIIFTKADGLGIQMPDPDFSVSDVKLFVGSRRMIDVMDVSTQRGMEMSMS
QWRRYYETPASEREKLYNVISLEFSHTKLEHLVKRPASVDLIDWVDNMWPRHLKERQRDS
TNVITDMQYPKVQKYCLMSVKGCFTDFHVDFGGTSVWYHILRGRKVFWLIPPTPHNLELY
ENWVLSGKQGDIFLGDKATACQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHSFN
IPMQLNIYNIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNTSHLTPEFQRHSLGIGLK
KDDFTKPNNENTEEKTEVKEEGDEEEEEAPSPPARPGVKVHLTPLELEGLWQLLHKLEAL
PAHKKCVPAGIRNAPALLGDIRALLEEHANDDPKLSYTGKPIVTWPKRPSWYRPLPPPPS
VMYRPRASGSGPTMAPVPRPTKPASSISALRRRRVRCKRCEACRRSECGDCTYCRDMKKF
GGPGRLKKSCILRQCLAPALPLTAVCAICKEGSQEDAEGTQTTQTLMECSECGQITHPEC
IKVPGEGVINKDLPSCWECPKCVQDKNTESSSSNSEEEGKSTVTTSSPSSAPPAKRAYRE
GIGVGGLRLGRKGQPPPSPLSLPLTRSRRQPPPSQKILLQHQQSRKRAGALERQHRKRIK
LERSKLFQSTRPSVSVSPKLLRHRSLERGSLFRAGLSRGMSRRRGTSSYQGREARLKSEA
RSGALRGRTEREEDGDDNNKEEENEKTDRRENGLGGKENRPQRYGGRPTEDENADGQQNG
ERETEREEDGEQTRSDSSGVLSDETRDQRSCVTVTLHPTRGRRDPSTIVPKLQANVSSVS
HTQSNSDFQGKSLLRPPLRGDSRRADKAHSHTHSHAARPQLQSPTLTRSTSKHAHVSQSL
RCSSKESHHNTTRERNGKNVRPERGKPPASSPSSTSCTSPEQNGASEPGWGRLVWVSVFR
YLNRTELCVCMAVCKSWYKWGCDKRLWTHISLSRCQSISPQALSGIIKRQPVTLDLSWAK
ISKKQLTWLINRLPGLKDLVLSGCNWTSVSALSSPSCPLLRSLDLRWADGVKDAQIRELL
SPPGSNNRSQLRNVQCLRLCGLEVTEATLRLIIRHMPQLTRLELSHCPLTDNALNLLTAV
GSSTRNTLTHLNLAGCSRLTDHCLVYLQRLSCLSVLDLRSCKGISRLACEKFISELSVNA
LYCLSDDKLIQRIS
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggaggagacccgctacagcaagcgcctgcgaacaggaacacgccggcgctaccaggat
gatggcatctcagatgatgagattgaggggaagacgacttttgacctggaagaaaagctt
gaaagcagcgacttcaattcagacttggtcaaaattatggatggaaaagacttcactttt
gagtacatccagcgggaggggcttcgggaccccatcatctttactaaagcagacggtctt
ggcattcagatgcccgatccagacttcagcgtgagtgacgtgaaactgtttgtaggcagt
cgaaggatgattgacgtgatggatgtaagcactcaaaggggcatggagatgtcaatgagc
cagtggaggcggtattatgaaactccagcctcagaaagggaaaagctatacaacgtcatc
agtcttgagttcagtcatactaaactggagcatctcgtcaagagacctgcctccgttgat
ctgatcgactgggtggataacatgtggccacggcacctgaaggagagacagagagactct
accaacgtcatcactgacatgcagtaccccaaagtacagaagtactgtctgatgagcgtg
aagggctgctttacagacttccatgttgactttggtggcacatcagtctggtatcacatc
ctgaggggacgcaaggtgttctggctgatcccacccacgccacacaacctggaactctat
gagaactgggtgctgtcgggaaaacagggtgacatcttcctcggggacaaagccaccgcc
tgccagcgcattgagctaaaacagggttacacctttatgatcccctcaggttggatccat
gcagtatacactcccgaggatacgctggtgtttggagggaatttcctgcacagttttaac
attcctatgcagctgaacatctacaacattgaggaccgcacacgggtcccagctaagttc
cgttacccgttttattacgagatgtgttggtatgtgttggagcgttacctgtactgtctc
accaacacctctcatctaacgccggagttccagagacactcactgggcatcgggctgaaa
aaagatgacttcactaaaccaaacaacgagaataccgaggaaaaaacggaggttaaagaa
gaaggtgacgaggaggaagaagaagctccctctcctcctgcccgtcctggggtgaaggtc
cacctgacgccgttggagctggaaggactctggcagttgctgcacaagctggaggcgttg
cccgcccacaagaagtgtgtacctgcagggattagaaatgctccagcacttctcggtgac
atccgtgccctgctagaagagcatgccaatgatgatccaaaattgtcttacactggaaaa
cccattgtcacatggcctaaaaggccctcgtggtacaggcctctccctcctcccccatct
gtaatgtaccggccacgcgcttcaggttcgggcccaacgatggccccggtgccacggcca
accaagcccgcatcttctatctcggctctgaggcggcggcgtgtgcgctgtaaacgctgc
gaagcctgcaggcgctccgagtgtggagactgcacctactgcagggacatgaagaaattt
ggcggccctggtcgactcaagaagtcctgcattctcagacagtgcctggctccggcgctg
cctctgactgctgtctgtgccatatgtaaagaggggagccaggaagacgctgaagggacc
cagaccacccaaacgctcatggagtgctctgaatgtggtcagattacacacccagaatgt
ataaaggtcccaggggagggtgtgatcaataaggatcttcccagttgctgggagtgtccc
aaatgtgtccaagataagaacacagagtcttccagcagtaattcagaagaggagggcaaa
agcactgttacgactagctcaccatcctctgctcctcctgctaagcgggcgtacagggag
ggtattggggtggggggtctgcgtttggggcgcaagggtcagcctcccccgtcgcccttg
tccctgcctctgactcgctcccgacgccaacctccaccctcacagaaaatcctgctgcag
caccaacagagccgcaagagagctggggcactggagcgacagcacaggaagaggatcaaa
ttagagaggagcaaactcttccagtcgacacggccgtctgtctctgtttctccaaagctc
ttgcgtcatcggagtttggagagagggagcctgttcagggcaggactcagcaggggcatg
tcccgcaggagaggcacctcatcctatcagggaagagaagcgcggcttaaaagcgaagca
agaagcggagctctgcggggaaggacagagagagaagaggatggagacgacaataacaag
gaggaagaaaacgagaagacagataggagagagaacgggctgggaggtaaagagaaccgg
ccacagagatacggaggaaggccgacggaagatgagaacgctgacggccaacagaacgga
gagcgggaaacagagagggaggaggacggagagcagactcgctcagactcttccggggtg
ctcagcgatgagaccagagatcagaggtcatgcgtgaccgtgaccttgcatcctacacga
ggcagacgggatcccagcactattgtccccaagctacaagcgaatgtatcctctgtaagc
cacacccaaagcaacagcgactttcaaggcaagtctctgctccgccccccactccggggt
gattcacgccgtgcggacaaagctcactctcacacacactcgcatgcagccaggccgcaa
ctccaatcccccacccttaccaggagcacttccaaacacgctcacgtgagtcagagctta
aggtgtagctccaaagagtcccatcacaacacgacacgggagaggaatgggaaaaacgtg
cgaccggagagagggaagcctcctgcctcgtctcccagctcaacgtcctgcacatcacct
gagcagaatggagcgagtgaaccaggctggggcaggctggtgtgggtgtccgtcttccgt
tacctgaatcgaaccgagctgtgcgtctgcatggctgtgtgtaagagctggtacaaatgg
gggtgtgataagcgcttgtggacgcatatcagtttgagccgctgccagtccatcagccca
caggccctctccggcatcatcaagcgccagccagttacactggacctgtcctgggccaaa
atatccaagaaacagcttacatggctcatcaaccgattaccagggctgaaagatctggtg
ctttcagggtgtaactggacatctgtctctgctctgagctctcccagctgtcctttactg
cgctcgctagacctacgctgggcagacggcgtcaaagatgcacagatcagagagctgctc
agcccaccaggaagtaataaccgttcccagctgagaaacgtgcagtgcttgaggctgtgt
ggtctagaggtgacggaggccactctgaggctgatcatcaggcacatgccccagctgacg
aggctggagctctcacactgccctctgactgacaacgctctcaacctcctcactgccgtg
ggctcatccacacgcaacacactcacacacctcaacctagcaggttgcagtcgtctgacg
gaccactgtctggtgtatctgcagcgtttgtcctgtctctctgtgcttgacctgcgcagc
tgtaaaggaatctcccgtctggcctgcgagaaattcatctccgagctgtccgtcaatgcc
ctctactgcctatcagacgataaacttatccagagaatatcctag
DBGET
integrated database retrieval system
