Pangasianodon hypophthalmus (striped catfish): 113546267
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Entry
113546267 CDS
T05759
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113546267
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113546267
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
113546267
NCBI-ProteinID:
XP_026801835
LinkDB
All DBs
Position
Unknown
AA seq
1832 aa
AA seq
DB search
MEGVSLEAGLCTQRADTEEVDMAFRIDKKIQLSAPTQQLFPDSAFPENFSLMTTVRAKKN
AQFFLLSMYDEQGVQQLGLELGRSPVFLYEDHRGQPTPDLYATFKKINLADGKWHRIAYS
VEGKSVTLYLDCKKVETLDLHRGDDPVVRTDGVTVFGTRLLDEEVFEGDIQQLLIVDDPQ
AAEEYCHHYIPDCDSPLPYRTQNYEPEETKPTKLDDVMQSDEPEPPKKKKDRKGKKNKKK
NRSKKGGKKESRKKRKEAEAFEEGFLEVSTHRLEYLTRAITPAVTEPTTAVTTPNVTAEE
IDSIPEMPTHEPDSLPTTSPEDVTVSLTALPQSTQTEVEEEKPVKTPEVEEDTEDIYSSP
YHDLSVSTVTVGTNNSEYELFEYEDFKNSSESSEQYEEYEAYEDRYGPAEREGVGTWDGQ
GRHGLEKGQKGEPAIIEPGLIIQGPLGPPGPAGLPGLPGVTGPPGPPGDPGDVGSEGRPG
LAGADGIPGPPGTMLMLPFHYAGDSQKGPVLSAQEAQAQAILQQTRISLKGPSGPAGLTG
RPGPVGLPGSSGLKGDSGDAGPLGPRGVPGPPGLSGKPGKRGRPGADGGRGAPGETGAKG
DRGFDGLPGLPGDKGHRGDRGKPGQPGPPGESGEKGADGPVGPRGQPGEPGPRGLVGPRG
PPGPPGQPGIRGVDGVQGSKGNQGPSGEPGPPGQQGNPGVQGFPGPQGPIGMPGEKGPQG
KMGMQGLSGIDGPPGHPGREGPPGEKGLLGLPGAQGPIGYPGPRGVKGAEGVRGLKGSKG
EKGEDGFPGTKGDMGAEGDRGDIGPSGPRGEDGPEGPKGQLGPIGELGPPGIAGEKGKLG
VPGLPGYPGRQGLKGSVGFPGVPGMPGEKGKRGSAGTPGTAGERGPNGARGGRGARGATG
APGAKGSSGHDGPPGPPGDKGPQGPQGQNGYPGPKGPNGPAGKDGLPGHPGQRGEPGFQG
KTGPPGPVGVVGPQGKTGETGPTGDRGHPGPPGPPGEQGLPGAAGKEGAKGDPGPMGIPG
KSGPAGRRGFRGSRGMPGSTGAAGLKGEEGPPGAAGAIGATGERGPSGPAGGIGLPGRAG
GVGSAGPMGEKGEPGEKGLTGPAGQDGEQGPVGLLGPAGPPGPPGEDGDKGEHGGPGQKG
SKGDKGDPGPPGPTGSVGPIGPPGLPGVDGEPGPRGQQGMYGQKGDEGLRGLVGATGPPG
LQGMPGPPGEKGESGHVGPLGPPGQHGPRGPVGTTGGEGAQGMPGGVGQPGLVGEKGEDG
EAGSPGNVGETGPPGEKGDVGEKGDTGPPGAAGPPGIRGPPGEDGPKGTPGPIGFPGDPG
PPGEAGPNGIDGGPGAKGDSGEPGKAGPPGASGEPGPHGPPGRRGHIGAAGNEGKQGKNG
EKGSPGSEGPPGKTGPVGPQGQPGRPGPEGLPGIPGPAGEQGLNGPPGQTGPPGPMGPAG
LPGLKGDPGSKGEKGHGGLIGLIGPPGDMGEKGDRGLPGNEGIPGPKGDEGVAGSSGPTG
PPGPHGLSGAMGEKGSKGDEGAVGPRGDQGPAGPPGLPGPPATMIEPLPIREGRKKRRRN
SDRNRGASAEVAATEEEQEVEVQLNMEDFLQADAPLEDAEGMEEVFASLNSMKMEVELMR
KPLGTFESPARTCKELMMCYPDYKDGEYWIDPNQGCHKDSIKVFCNFTADGETCLHPDKR
IETVKLAAWSKEKPGSWYSRYRRGKQFSYIDADGITVSVVQLTFLKLLSATARQSFTYVC
QNSAGWYDATSNGHQHALRFRASNDEEMTHDKTPFITSLYDGCQTRKGQDRTVLEINSPR
SELLPIIDVSASDFGNNNQKFGFQLGPVCFNG
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgtgtccttggaggcggggctgtgcacacaaagagctgacacggaggaagtg
gacatggcattcaggatagacaaaaagatccagctcagtgctccaacccagcagctcttc
ccagactcagcttttcctgaaaacttctccctgatgacgacggtgcgggcaaagaagaat
gcccagttcttcttgctgtccatgtacgatgaacagggcgtgcagcagctgggcctggag
ctgggcagatcacccgtctttctctacgaggaccacaggggacagccgacccctgacctc
tacgccaccttcaagaagatcaacctggctgatggaaagtggcaccgcattgcctacagt
gtagaaggaaagtcagtcacgctgtatttggactgtaagaaggtggagactctggatctg
caccgtggagacgaccctgtggttcgcacggatggcgttactgtgtttgggacgaggctg
ctggacgaggaagtgtttgagggagatatccagcaactgctgattgtggacgacccccaa
gctgcagaagagtactgtcatcactacatcccagactgtgactctcctctgccttatcgt
acccagaactatgaacctgaggagaccaaacccaccaagcttgatgacgtgatgcaaagc
gacgaaccggagccaccaaagaaaaaaaaagacaggaagggcaaaaagaacaaaaagaag
aaccgttcaaagaaagggggaaagaaagagtcccggaagaagaggaaagaggcggaagct
tttgaggagggatttctcgaggtgtccactcatcggcttgagtatctcacacgagctata
acgcctgctgtaacagaacccacgacggctgtgacaactccaaatgtgaccgctgaggag
atagactccatccccgagatgcccacgcacgagccagattcactgcccactacatcacct
gaagatgtcactgtatcactcactgcattgccccagtctactcagactgaggtggaggag
gaaaaaccggtaaaaacgcctgaggttgaggaagacacagaggacatttacagcagcccg
taccatgacctctccgtctccacggtaacagtgggcaccaacaacagcgagtatgagctc
tttgagtacgaggactttaagaacagcagtgagagctcggagcagtatgaggagtatgaa
gcctacgaggatcgctacggcccggcggagagagagggagtggggacctgggacggacag
ggaagacatggtttagagaaaggccagaaaggagagccagccattattgaaccgggcctt
ataattcagggacctctgggaccaccaggacctgctggtcttccaggccttccgggggta
acaggccccccaggaccccctggagatccgggtgatgtgggctctgagggacgtccaggc
ctcgcaggggctgatgggataccaggtcccccagggaccatgctcatgctgccgtttcat
tatgctggtgattctcagaaaggccccgtgttgtcggctcaggaggcgcaggctcaggcc
atcctccagcagaccagaatctcactgaagggaccttcgggcccggcaggactcacgggc
agaccaggaccagtgggtcttccaggttccagtggacttaaaggagacagcggggacgct
ggacctctggggccgcgcggggtgccaggtcctccgggtcttagcggcaagccaggcaag
cggggtcgcccgggggcagatggaggtcgaggagctccaggagagacgggagcaaagggt
gacaggggctttgatggactaccagggcttccaggggacaaaggacacagaggggatcga
ggaaagccaggacagcctggtccacctggggaatctggtgagaagggtgcagatggacct
gtaggaccaagaggacaaccaggtgaacctgggccaagaggacttgtaggacccagagga
ccacctggaccacccggacagcctggtatacgtggtgtggatggtgttcaaggctctaaa
ggcaaccagggtccgtcaggagagcctggtcctccaggacaacaggggaacccaggcgta
cagggctttccaggtcctcagggtccaattggcatgcctggagaaaagggacctcagggg
aagatgggaatgcaggggctttctgggattgacggtcctccaggacatccaggcagagag
ggaccacctggagagaaggggctactgggattacccggagcacaggggcctatcggatac
ccggggcctcggggggtcaagggcgctgaaggtgtacgaggtctgaaaggaagcaaagga
gagaagggagaagatggcttcccagggaccaaaggtgacatgggagctgaaggagatcga
ggtgacattgggccttctggaccccgtggcgaggacggaccagaggggcctaagggccag
ttaggacctattggagaactcggacctccaggaatcgctggagaaaagggcaaactcggt
gtcccagggttacccggctatccaggaagacaaggccttaagggatccgtcggctttcca
ggagtgccgggtatgccaggagagaaggggaagaggggatctgcaggtacaccgggcacg
gcaggtgaaagaggtccaaatggggcacgcggaggccgaggggcacgaggagctacagga
gcaccgggagccaagggctcgtctggccacgacggcccaccaggtcccccaggagacaag
ggtcctcaagggccgcagggacagaacggatatccaggacccaagggaccaaatggccct
gcaggaaaggatggactgccaggtcatccaggccaaaggggagagccgggatttcaaggg
aaaacaggaccaccaggacctgtgggagtggtcggaccacagggcaaaactggagagact
ggaccaactggggacagaggtcaccctgggccaccaggacctcctggagagcaaggtctg
cctggagcagcaggcaaagaaggtgccaagggcgatccgggccccatggggattcctgga
aagagcggtcctgctgggcgccgcgggtttagaggcagtcgaggcatgccaggctccacg
ggtgctgctggtttgaaaggcgaagaaggacctcctggagctgcaggagcaattggtgct
actggcgagagagggccttctgggccggctggtgggattggtcttcctggccgtgctgga
ggagtcgggtctgctggaccaatgggcgagaagggagaaccaggagaaaaaggacttaca
ggtcctgctggacaggatggagaacaggggcccgtcggtctactcggacctgctggacca
cctggtccacctggagaggatggtgataagggagagcatggaggtccgggacagaaagga
agcaaaggagacaaaggagacccgggacctccaggaccaacagggagtgtagggcctatt
ggaccccctggactaccaggtgtggatggggagccagggccccggggccaacaggggatg
tacggacagaaaggtgatgaaggacttcgaggacttgtaggtgccactgggccaccaggc
ctgcagggaatgcctggacccccgggagagaagggagagagcggtcatgttggaccactg
ggccctccaggacaacacggtcccagaggtcctgtgggaaccactggcggagagggtgct
caggggatgcctggtggagtcggccagcctggtttagtaggagaaaagggtgaagatgga
gaggctggaagtccaggaaacgtgggtgaaacaggccctcctggtgagaaaggagatgtg
ggtgagaaaggggacacgggcccccccggtgctgcagggccaccgggaatccgaggccca
ccaggagaggatggacctaaaggaaccccaggccccattggatttcccggagacccagga
ccccctggagaggcaggtccaaatggtattgatggtggcccaggagcaaagggagatagt
ggagagcctgggaaagctggaccaccaggggcttcgggggaaccaggacctcatggacca
ccagggcggaggggtcatataggtgctgcagggaatgaaggaaaacaggggaagaatgga
gaaaagggttcacctggttcggagggtccacctggaaagacaggacccgtaggaccccag
ggacaacctggaaggcctggtccagagggactacctgggatcccaggccctgcaggagaa
cagggtttaaatggtccccctggacagactggaccgcctggccctatgggacctgctgga
ctgccaggactgaaaggagatccaggcagcaagggagagaagggtcacggaggattgatc
ggattgatcgggcctccaggagacatgggggagaaaggtgaccgaggcttgcctggaaat
gagggaatacctggtcctaaaggagatgagggtgttgctggatcttctggtcctactggg
cctcctggacctcacggactttctggtgccatgggtgagaagggatccaaaggagatgag
ggagcggtcggtccaagaggagaccaaggacctgcaggcccaccaggactacctggtcct
ccagccaccatgattgagccactgcccatccgagagggacgcaagaaacgtaggaggaac
tcagaccggaacagaggagccagcgcagaagttgcagccacagaagaggagcaggaagtg
gaggttcagctgaacatggaggacttcctgcaggctgatgcgcctctggaagatgctgag
ggaatggaggaggtgttcgcttctctgaactccatgaagatggaggtggagctgatgagg
aagccactgggaactttcgagagtccggcacgcacctgcaaagagctgatgatgtgctac
cctgattacaaagatggtgaatattggattgacccaaatcagggctgccataaagattcc
atcaaggtgttctgcaacttcacggctgatggggaaacctgtctgcacccggataaacga
atcgaaacggtgaaacttgcagcctggagcaaagagaagccgggcagctggtatagccgg
tacaggaggggcaaacagttctcctatatagacgccgacggcatcacagtctctgtagtc
cagctgaccttcctgaagcttctgagcgccacagccagacagagcttcacctacgtctgc
cagaactcagccggctggtacgacgccaccagcaacgggcaccagcacgccctgcgcttc
cgtgccagcaacgacgaggaaatgacgcatgacaagactcccttcataacatctctgtac
gacggctgccagacacgcaaaggccaggacaggacggtgctggagatcaactctccgaga
tcggagctgctccccatcatcgacgtttctgcgtcagactttgggaataacaaccagaag
tttggcttccagctcggacctgtgtgttttaacggttaa
DBGET
integrated database retrieval system