Phytophthora infestans: PITG_07051
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Entry
PITG_07051 CDS
T01333
Name
(RefSeq) Poly(A)-specific ribonuclease PARN-like protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pif
Phytophthora infestans
Pathway
pif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PITG_07051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pif03019
]
PITG_07051
Enzymes [BR:
pif01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PITG_07051
Messenger RNA biogenesis [BR:
pif03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
PITG_07051
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF2288
Motif
Other DBs
NCBI-GeneID:
9464014
NCBI-ProteinID:
XP_002905017
UniProt:
D0N750
LinkDB
All DBs
AA seq
589 aa
AA seq
DB search
MLRASQSSLRSLLLRPRRFSTVTLEASEGEMNVTRHNFSKHLKDLQKDLQLPTCRLVAID
TEFTGLSPNELEREQYLDTLEERYHKVKRAGESFLITQFGLSIVHLDQKDQFHIKTWNFY
VFPRPYGSLDERFLCQASSLQFLSEHGFDFNKFIGDGIPFVNLAKTPAMKKRLQRRIDGL
TKVNKNLQLSDDGMAFQKDVKQQLAKWIAGGAKKGEKLFVPTRNSFYSMIVHETARAKAS
YLYSEAADGGVQVSYLSKKMKDELIAAKVKEMRKEMDEAIGFSKVIEALSESKLPVVGHN
ALLDFVYVFHQFCKPLPETLAEFKTQLLELFPTIYDTKHVTLRSPLGEKLKSTGLSSLFE
YMRENVKPEPESLIPSDKRFDTYREALKAEADGNESLLCHEAGFDAFMTAVCFLGLLAHD
SKGELPDQLVPKEGSSARLKVRLEELESFKNQLNLMISDQSFLDLGNVEQTIDRARVYRV
TSTTKRRIQHVRMEDVFESSKVQRIVRESDQDAYVVLTEPATVNDEVKTQLGLNISTYDE
HVAAEAETVRERKEQADLKLFEKILAARASTSSVETKEETSSWNSCTIS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtgcatctcaatcgtcgcttcggtcgctgctcctccgtccacgtcgtttcagc
accgtcaccctcgaagcttcagaaggcgagatgaacgtgactcgccacaacttttcgaag
cacttgaaagacctgcagaaggatctacagctaccaacttgccgcttggtcgccatcgac
acggagttcacaggtttatcgcccaatgagctcgagcgcgaacaatacctagacacgctg
gaggagcgttaccacaaagtgaagcgtgcaggcgagagcttcctcatcacgcagtttggg
ctctccattgtgcatttggatcagaaggatcagttccacataaagacttggaacttttac
gtattcccaagaccgtacggctcgctggacgagcgcttcttgtgccaagcctccagtctg
caatttctgtcggaacacggcttcgactttaacaagttcattggagatggcatcccattc
gtgaatctagccaagactccagcgatgaagaagcgtctgcagcgtcgtattgacggactg
acaaaggttaacaagaacttgcaactatcggacgatggcatggccttccagaaggacgtt
aagcaacagctggctaaatggatcgctggtggagccaagaagggcgagaagctgtttgtg
cccacgaggaactcgttttactccatgatcgtgcatgagacagcgcgtgccaaggccagt
tatctgtactcggaagctgccgacggtggcgtgcaggtgtcgtatttgtccaagaaaatg
aaggatgaactgatcgctgctaaggtgaaggagatgagaaaagagatggatgaagccatt
ggcttctccaaggtgatcgaggctctgagtgagagcaaactgccggtggtcggacacaac
gctctactggactttgtgtacgtcttccaccagttctgtaagcccctcccagagacctta
gcggagttcaagacgcagcttctggagctcttcccgactatctacgacacaaagcacgtt
actttgcggtctcctcttggcgagaagctcaagtccacgggtctatcgtcgctgttcgag
tacatgcgtgagaatgtcaagccggagcctgaaagtctcatcccttcagacaagcgcttc
gatacataccgtgaggctcttaaggctgaagctgacggcaacgagagcttgctgtgccac
gaggctggcttcgacgcgttcatgactgctgtgtgcttccttggtctgttagctcacgac
tccaagggtgagttacctgaccagctcgtgcctaaggaaggcagctcggctcgtcttaaa
gtgcgtctggaggagctggagagcttcaagaaccagctgaacctcatgatctcggaccag
agcttcctggaccttggcaatgttgaacagacgatcgatcgcgctcgtgtgtaccgtgta
actagcactactaagcgccggattcaacatgtacgcatggaggacgtgttcgagtcgtcc
aaggtgcaacgtatcgtccgtgagagcgaccaagacgcgtatgttgtgctcacggagcct
gcaacagtgaacgacgaggtgaaaacacagctgggcttgaacatctccacgtacgacgaa
catgtagctgctgaagccgagacggttcgtgagaggaaggagcaggcagatcttaagctg
tttgagaagatcttggctgcccgcgcctcaacatcaagcgtagagacgaaggaagagaca
tcctcgtggaatagctgcacgatttcgtag
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