Pigmentiphaga sp. H8: EGT29_14905
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Entry
EGT29_14905 CDS
T05719
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pig
Pigmentiphaga sp. H8
Pathway
pig03030
DNA replication
pig03410
Base excision repair
pig03420
Nucleotide excision repair
pig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EGT29_14905 (ligA)
03410 Base excision repair
EGT29_14905 (ligA)
03420 Nucleotide excision repair
EGT29_14905 (ligA)
03430 Mismatch repair
EGT29_14905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pig03032
]
EGT29_14905 (ligA)
03400 DNA repair and recombination proteins [BR:
pig03400
]
EGT29_14905 (ligA)
Enzymes [BR:
pig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EGT29_14905 (ligA)
DNA replication proteins [BR:
pig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EGT29_14905 (ligA)
DNA repair and recombination proteins [BR:
pig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EGT29_14905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EGT29_14905 (ligA)
MMR (mismatch excision repair)
DNA ligase
EGT29_14905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EGT29_14905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
RNA_pol_A_CTD
POLH-Rev1_HhH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AZG09045
UniProt:
A0A3G8GLJ8
LinkDB
All DBs
Position
complement(3136986..3139043)
Genome browser
AA seq
685 aa
AA seq
DB search
MVSGVDRENQAMQRAAQLRQELALHNARYYVMDDPLISDAEYDALFAELVKLEQEFPLLA
TPDSPTQRVGGAPLSAFGSVRHAVSMLSLNNAFDDEDIQAFDKRVRDGLETESAVEYACE
LKLDGLAVSLRYEDGKFARAATRGDGQTGEDITANIRTIRSIPLTLAGPVPDVLEVRGEV
LLFRKDFERLNDAQREAGEKVFINPRNAAAGSLRQLDPRITARRPLRFFAYGWGEIRGSL
PGKEARADAPPFDTHMGMLDWLQELGMPVNRERQLVSDAAGLLAFYRRVEGLRASLPYDI
DGVVYKVNALEAQRALGFVSRAPRFAVAHKFPAEEATTELLGIEVQVGRTGAITPVARLK
PVFVGGVTVTNATLHNEDEIERKDVRIGDTVVVRRAGDVIPEVVTPVLDKRPANARKFVM
PSQCPVCGSAIERPEDEIIARCTGGLFCAAQRKQALWHAAQRRALDIEGLGEKLIDQLVE
RGRVHTLADLYTLNEEELAGMDRMGEKSARNLVESIAATRTPPLGRFLFALGIRHVGEST
ARDLARHFGNLDAVMNAAEAELLAVPDVGPVVAASIFRFFAEPHNREVVADLLRNGVTPG
TETVVDRTAGPIGGKIFVLTGTLPTLAREDAAELIRAAGGKVTGSVSKKTHYVVAGADAG
SKLAKAQELGIAVLDEDGLKALLQS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgggggtcgatcgggaaaaccaggccatgcagcgggcggcgcagttgcgccag
gagctggccttgcacaacgcccgttactacgtgatggacgatccgctgatcagcgacgcc
gagtacgacgcgctgttcgcggagctggtcaagctcgagcaggagttcccgctcctggcc
acgcccgattcccccacccagcgggtggggggcgcgccgctgtcggctttcggttcggtg
cgccacgcggtgtccatgctgtccctgaacaatgccttcgacgacgaggacatccaggcc
ttcgacaagcgggtgcgcgacggcctggaaacggaatccgccgtcgagtacgcctgtgaa
ctgaagctggacggactggccgtcagcctgcgctacgaagacggcaagtttgcacgggcc
gcgacgcggggcgatggacagacgggcgaagacatcaccgccaacatccggaccatacga
tccatcccgctcaccttggcgggccccgtgcccgacgtgctggaggttcgcggcgaggtg
ctgctgttccgcaaggatttcgagcgcctgaacgacgcccagcgcgaagccggcgagaaa
gtcttcatcaatccccgcaatgccgcggcgggcagcctgaggcagctcgatccgcgcatc
accgcccgccgtccgctgcgattcttcgcctacggctggggcgagatacgcggcagccta
ccgggcaaggaggcccgtgccgacgcgccgcccttcgatacccacatgggcatgctggac
tggctgcaggaattgggcatgccggtcaaccgcgagcgccagctggtgtcggacgcggcc
ggtttgctggcgttctaccggcgggtcgaggggctgcgagcctcgctgccctatgacatc
gacggcgtggtctacaaggtcaacgcgctcgaggcgcagcgcgcgctggggttcgtttcg
cgcgccccgcgctttgccgttgcccacaagttcccggcagaagaagccaccaccgagctg
ctcggcatcgaggtgcaggtcggccgcaccggggccatcacacccgtggcgcgcctcaag
ccggtgttcgtgggcggcgtcacggtcaccaacgcgaccctgcacaacgaggacgagatc
gagcgcaaggacgtgcgcatcggcgatacggtggtggtccgccgcgccggggacgtcatt
cccgaggtcgtgacgccggtgctggacaagcgtcccgccaacgcccgcaagttcgtcatg
cccagccagtgcccggtgtgcggatcggccatcgagcggcccgaggacgaaatcatcgcg
cgctgcaccggcggcctgttctgcgccgcgcagcgcaagcaggcgctgtggcatgccgcc
cagcgccgcgcgctggacatcgaagggctgggcgagaaactgatcgaccagctggtcgag
cgcggccgcgtgcacacgctggccgacctctacacgctgaacgaggaagaactggccggc
atggaccgcatgggcgagaagtccgcgcgcaacctggtcgagtccatcgccgcgacccgt
acgccgccgctgggccggtttcttttcgcgctgggcatacggcacgtgggcgagtccacg
gcccgcgacctggcgcgccatttcggcaacctggacgcggtgatgaacgcggccgaggcc
gaactgctggcggtgccggacgtcggacccgtggtggccgcgtccatctttcgcttcttc
gccgaaccgcacaaccgcgaggtcgtggccgacctgctgcgcaacggcgtgacgcccggc
acggaaaccgtcgtggaccgcacggcgggccccataggcggcaagatcttcgtgctgacc
ggcacgctgcccacgctggcccgcgaggacgcggccgaactgatacgcgccgccggcggc
aaggtcaccggctcggtatccaagaagacccactatgtcgtcgccggcgccgacgccggc
agcaagctcgccaaggcccaggagctcggcatcgccgtgctcgacgaagacggcctgaag
gccttgctgcagtcttga
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