Paenibacillus sp. JDR-2: Pjdr2_2220
Help
Entry
Pjdr2_2220 CDS
T00977
Name
(GenBank) recombination helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
pjd
Paenibacillus sp. JDR-2
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjd03400
]
Pjdr2_2220
Enzymes [BR:
pjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pjdr2_2220
DNA repair and recombination proteins [BR:
pjd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Pjdr2_2220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACT00876
LinkDB
All DBs
Position
2608185..2612018
Genome browser
AA seq
1277 aa
AA seq
DB search
METNNMPAKPENSTWTDDQWRAIVTEGSDVLVAAAAGSGKTAVLVERIIRKISSFSDVDR
LLVATFTKAAAAEMKDRIRIALEKELERQPESEHLRRQLALMNRASITTLHSFCLDVIRR
YYPLIGLDPGFRIANETESELMRIDVLDQLFEEKYEGSSGDSGAFLRLADRYGGERGDEP
LYKLVQQLYDFAQSHPWPEHWLRQTAASFMVDNVEGLRSSPWVASLRADVELALSGAASL
LNQAMQLTREPAGPAPYAATFEEDLAIVGGLAETVRMHPWEMWFESFQAVQFGKLKAMRG
DDYDKTMQEQAKELRDQAKKLISSLADELFGRSAEEFAWELQELAPLMAALSELVIEFGQ
RYEAAKRSKGLLDFGDLEHYCLRILRAPESTPELTTPSPAATEYQRQFDEILLDEYQDTN
MVQEAIVSLIANPHAGNRFMVGDVKQSIYRFRLAEPNLFMSKYKNYGAPGGDGLRIDLAR
NFRSRLEVVDGVNDVFRAIMRETVAEMDYDKRAELVCGASYPEPDLPGRFAVELAVIDKA
GSSNEEDGAVSPADSDDESEQGAGPAAESAEELQTAQLEARLIARQIRSLLDEGFRVYDG
KKRESRPMEWRDIVILLRATQAWAPVIIEELQGAGIPAYAELSSGYFDATEVETILSLLR
VIDNPYQDIPLAGTLRSPIFGLNAEELALIRIGAMQDTYYDAVLQAAGDLLLPDELRRKL
SLFLERLDRWRNDARQGSLADLIWSIYRETGYYDFAGGLPGGVQRQANLRALHDRARQYE
ATSFRGLFRFLRFVERMRDSGGDLGTARALGEQENVVRIMSIHKSKGLEFPVVFVAGLGK
NFNQQDLRSAFLKHKQLGFGPKYIDPEKRVSYPTLPFLSIRRRMRMEMLAEEMRILYVAL
TRPKEKMFLVGTVSDAAAKQRRWQSASDAKGYISDFRLSSASTFLDWLGPLAAAAFNQLP
DETVPGHEDSRLLQWRAGVVDAAMLGLEAAIGVEERTEEDQAREDRMQGVLSLAQLDQVE
QDEELRNRLEWRYGYRASTLVAAKTSVTEMKRLHSEAVEMPEDSAALYPADTFSDRQQED
GKKSSGGGSYTFRLRRPRFMEEAALTAAEKGTVSHLLMQHLPLAGDVDVDRLGSILSDMV
SRKLLTARQADSIDLPAVAAFFDTEIGKRLVHAKWVRREVPFSCMFPAQRVYPGLAADMA
GEPVLIQGVIDCLFEDENGIVLLDYKTDRIYMKQWEQAAERHRFQLELYAEAIESVIGQP
IAESHVFFFDGGRAVKL
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgaataatatgccggctaagccggagaacagcacctggacggatgaccaatgg
cgcgcgattgtgacggaaggctcggatgttctcgttgccgcggcagcaggctcggggaaa
acagcggttttggttgaacggattattcggaaaatctcctcgttctccgacgtcgaccgg
ctgctggtcgcaacctttacgaaagcggcagctgcagagatgaaagaccggatccggatt
gcgctggagaaagaactcgagcggcagccggaatccgagcatctgcgcagacagctggcg
ctaatgaaccgggcttcgattacgacgctccactctttctgtctcgacgttattcgcagg
tattatccgttaatcggactggacccgggcttccggattgcgaatgaaacggaaagcgaa
ctgatgcgcattgacgtgctggatcagctgtttgaagagaaatatgaaggatcatccggt
gacagcggggcattcctgcgtctggccgaccgctacggcggcgagcgcggagacgagccg
ttgtacaagctggttcaacagctttacgactttgcgcaaagccatccttggccggagcat
tggctccgccagaccgcggcaagctttatggttgataacgttgaagggctcaggagcagt
ccttgggtggcaagcctgagggctgacgtggagctggcgctgtccggtgcggcgtccctg
cttaaccaggcgatgcagttaacgcgggagccggcgggtccggccccttatgcggcaacc
tttgaagaggatctcgcgattgtgggaggtctcgccgaaaccgttcgcatgcatccttgg
gagatgtggtttgaatcgttccaggccgtgcaattcggcaagctgaaggctatgcgcggc
gatgattacgataaaaccatgcaggagcaggccaaggagcttcgcgatcaggccaaaaag
ctgatcagctcgcttgcggacgaattgtttggacgttcggcagaggaattcgcatgggag
ctgcaggagcttgcaccgctaatggctgccctgtctgagcttgtcattgaattcggacag
cggtacgaagccgcgaagcggtcaaagggtttgctcgattttggcgacttggagcattat
tgcttaaggatattgagagcgccggagtcaacgcctgagcttacgactccgtcgcctgcg
gctacggagtatcagcgccagttcgatgaaattctgcttgacgaatatcaggataccaac
atggtgcaggaagctatcgtatcgctgattgccaatccgcatgccggcaaccggtttatg
gtcggcgatgtgaaacagagtatttaccggttccgtttggctgagccgaatttgttcatg
agcaaatacaaaaattacggcgcgcccggcggtgacggtcttcgaatcgatctggcccgc
aatttccggagccggcttgaggtggtagacggcgtaaatgacgtgttccgcgcaattatg
cgtgaaacggtcgcggagatggattacgacaagcgcgccgaactggtatgcggggcttcc
tatcccgagcctgatttgcctgggcgatttgccgtcgagcttgcggttatcgataaagca
ggctcttcgaacgaggaggatggggcggtatcgcctgcggattccgatgatgaatcggaa
caaggtgccggcccggctgccgaatcggcggaggagctgcagacggcgcagctggaggca
aggcttattgcccgtcagatccgttcgctgcttgacgaaggctttcgggtctacgacggc
aagaagcgggagagccgcccgatggaatggcgggacatcgttattttgctgcgggccacg
caggcttgggctcccgtcattatcgaggagcttcagggtgcgggcattcctgcctacgcg
gagctaagcagcgggtatttcgacgcgacagaggtagagacgatcctttctttgctgcgg
gtgattgataatccgtatcaggatatcccgcttgcgggtactcttcgttcgccgattttt
ggtttgaatgccgaagaactggctcttatccggattggagcgatgcaggatacctactat
gacgcggtgctgcaggcggcaggcgatctccttttgccggatgagctgaggcgcaagctg
tcgctgtttcttgagaggctggacagatggcggaatgatgcaagacaaggttcgcttgcc
gatttgatctggagcatataccgtgagaccggctattatgattttgccggaggtcttccc
ggcggcgtgcagcgccaagcgaatcttagagcgcttcatgaccgtgcccgccaatatgag
gcgacctccttccggggcttattccgtttcctgcgcttcgttgagcggatgcgggacagc
ggcggtgacctcggtaccgccagggcgcttggcgaacaggaaaacgtcgtgcgaattatg
tccattcataagagtaaaggacttgaatttcccgtcgtatttgtggcaggcttaggcaag
aacttcaatcagcaggatttgcgaagcgcatttctgaagcataagcagcttggctttggt
cccaaatatatcgacccggagaaacgcgtcagttatcctaccctgccgttcctctcgatc
aggcgtcgaatgcggatggaaatgcttgccgaggaaatgcgtattctctacgtagcttta
actcgcccgaaggagaaaatgttcctggttggcacggtatccgatgccgctgccaaacag
cgccgctggcagtcagcctcggatgcaaagggatatatttcggattttcggttaagctcg
gcgtctacttttctggactggctgggtccgctcgcagccgcagcgtttaatcagctgccg
gatgaaacggtgccgggacacgaggattcaagactgctgcaatggcgcgcaggcgttgtg
gatgctgctatgctggggcttgaggccgcgattggcgttgaggaacggacggaagaggat
caagcgagagaagaccgcatgcagggtgtattatctttagcccagcttgatcaggtggag
caggatgaagagcttcgcaaccggctggagtggcgttacggatatcgggcctctaccctc
gtggcggccaaaacctcggttacggagatgaagcggctgcattcggaagcggtggaaatg
ccggaggacagcgcagctttatatccggctgataccttctccgacaggcaacaagaagac
ggcaagaagagcagcggcggaggcagttataccttccggttaagacggccccggttcatg
gaggaagccgcgcttacggctgccgagaagggaacggtaagccatcttctgatgcagcat
ttaccgcttgccggcgacgtagacgtggatcggctggggtctattctgagcgatatggta
tcgcgcaagctattgacggcaagacaggcggattcgattgatcttccggctgtcgcagcc
ttcttcgacacggagatcggcaagcggcttgttcatgccaagtgggtaaggagagaggtt
ccgttcagctgcatgttcccggcgcagcgtgtatatccgggactggcagccgacatggct
ggcgaacctgttctgattcagggtgtcattgactgtctcttcgaagacgagaacggcatt
gtcctgcttgattataagaccgaccggatttatatgaagcagtgggagcaggctgcagag
cgccacagattccaattggagctgtacgcggaggcgatcgaatcggttatcggtcagccg
attgcggaaagccacgtgttcttctttgacggaggacgggcagtaaagttataa
DBGET
integrated database retrieval system
