Pseudomonas knackmussii: PKB_5087
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Entry
PKB_5087 CDS
T03081
Symbol
radA
Name
(GenBank) DNA repair protein RadA homolog
KO
K04485
DNA repair protein RadA/Sms
Organism
pkc
Pseudomonas knackmussii
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_5087 (radA)
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PKB_5087 (radA)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
ATPase
AAA_25
Rubredoxin_2
ChlI
Lon_C
DnaB_C
AAA_16
AAA_22
AAA
SLFN-g3_helicase
GvpD_P-loop
Rad51
RecA
nSTAND3
AAA_24
AAA_14
NTPase_1
MCM
PAXNEB
AAA_29
Motif
Other DBs
NCBI-ProteinID:
CDF86400
UniProt:
A0A024HMW4
LinkDB
All DBs
Position
complement(5349816..5351306)
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AA seq
496 aa
AA seq
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MTACATGICLLCELAIRGAKIARFNCRLLLAGTTTESAPMAKAKRMYGCTECGATFPKWA
GQCADCGAWNTLVETVIDNTPTGGTGSSGRGGWAGQQANIKTLAEVSIEEMPRFSTASNE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRLPALYVTGEESQQQVAMRARR
LGLPEDKLKVMTETCIESIISTARQEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAAL
LVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDGRLRLLRAVKNRFGA
VNELGVFAMTDRGLKEVSNPSAIFLTRAQESVPGSVVMATWEGSRPMLVEVQALVDTSHM
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMS
SLRNRPLDHQLLVFGEVGLSGEVRPVPSGQERLKEAAKHGFKRAIVPQGNAPKEAPAGLQ
VIPVTRLEQALDALFE
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgtgtgcgaccgggatatgcctgctctgcgagctggcgatccggggtgctaag
atcgcccgcttcaattgccggctccttctcgccggcactacgacggagtccgcccccatg
gccaaggccaagcgtatgtacggctgcaccgagtgcggtgccactttccccaaatgggcc
ggccagtgtgctgactgcggtgcctggaataccttggtcgaaaccgtcatcgacaacacg
cccaccggcggcaccgggagttccgggcgcggcggctgggccgggcagcaggccaacatc
aagaccctcgccgaagtcagcatcgaagagatgccgcgcttctccacggcctccaacgaa
ctcgaccgcgtgctcggcggcggcttggtggatggctcggtggtgctgatcggcggcgac
ccgggcatcggcaagtcgaccatcctcctacagaccctgtgcaacatcgccacgcgtctg
ccggcgctctacgtcaccggcgaagagtcgcagcagcaggtcgccatgcgcgcgcgccgc
ctgggcctgccggaagacaagctcaaggtcatgaccgagacctgcatcgaaagcatcatc
tccacggctcgccaggagcaaccgaaggtgatggtgatcgactcgatccagaccatcttc
accgagcagctgcagtccgcccccggcggcgtcgcccaggtgcgcgagagcgcggcgctg
ctggtgcgtttcgccaagcagagcggcacggcgatcttcctggtcggccacgtcaccaag
gaaggcgcgctggccggcccgcgcgtgctcgaacacatggtcgacaccgtgctgtatttc
gagggcgagtccgacggccgcctgcgcctgctgcgcgcggtgaagaaccgcttcggcgcg
gtcaatgaattgggcgtgttcgcaatgaccgaccgcggcctgaaggaagtctccaaccct
tcggcgatcttcctcactcgcgcccaggagtcggtgcccggcagcgtggtcatggctacc
tgggagggctcgcggccgatgctggtggaggtgcaggcgctggtcgacaccagccacatg
gccaacccgcgccgcgtgaccctgggcctggaccagaaccgcctggccatgctgctagcg
gtgctgcaccgccacggaggcatcccgacctacgaccaggacgtgttcctcaacgtggtg
ggcggggtgaaagtgctggagacggcctccgacctcgcgctgatggcagcagtgatgtcg
agcctgcgcaaccgtccactggatcaccagttgctggtgttcggcgaggtggggctatcc
ggcgaagtccgcccggtgcccagcggccaggaacgcctgaaagaggcggccaagcatggc
ttcaagcgcgccatcgtgccgcaaggcaatgcgcccaaggaggcgccggccggcctgcag
gtgatcccggtgacgcgtctggagcaggcgctggatgcgttgttcgagtag
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