Parvibaculum lavamentivorans: Plav_2432
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Entry
Plav_2432 CDS
T00580
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pla
Parvibaculum lavamentivorans
Pathway
pla03030
DNA replication
pla03410
Base excision repair
pla03420
Nucleotide excision repair
pla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Plav_2432
03410 Base excision repair
Plav_2432
03420 Nucleotide excision repair
Plav_2432
03430 Mismatch repair
Plav_2432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pla03032
]
Plav_2432
03400 DNA repair and recombination proteins [BR:
pla03400
]
Plav_2432
Enzymes [BR:
pla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Plav_2432
DNA replication proteins [BR:
pla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Plav_2432
DNA repair and recombination proteins [BR:
pla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Plav_2432
NER (nucleotide excision repair)
GGR (global genome repair) factors
Plav_2432
MMR (mismatch excision repair)
DNA ligase
Plav_2432
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Plav_2432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
ABS64041
UniProt:
A7HVV8
LinkDB
All DBs
Position
2628800..2630932
Genome browser
AA seq
710 aa
AA seq
DB search
MSAKRKSFDEALAQKDVDHLTLEEAPEELERLAAEIEKHDKLYYQKDAPRISDAEYDTLR
RRNEAIEARYPELVREDSPSHRVGAQPADGFGKVVHKVPMLSLSNAFDDEDVRDFALRIR
RFLNLKEEDILPITAEPKIDGLSAALRYEKGKFVMGATRGDGREGENVTENLKTIGDIPA
ELKGKNIPDVVEVRGEVYMSHEDFAALNERQREAGKPVFANPRNAAAGSLRQLDAKITAS
RPLRFFAYTWGEMSDLPADTQSGVMDAFRKWGFTVNPLFGRCDTVEALIDFYHDIEERRA
TLGYDIDGVVYKVDRLDWQNRLGFVSRSPRWALAHKFPAEQAMTVLEKIEIQVGRTGALT
PVARLTPVTVGGVVVSNATLHNADEIERLGVRPGDTVVVQRAGDVIPQIVRVVEDRPRGK
KKFVFPDTCPECGSHAVREVNPKTGKLDAVARCTGGLVCPAQAVERLRHFVSRNAFDIEG
LGEKQIAAFFEDGLIKKPDDIFTLAARDAKSLKKLKDREGWGATSARKLFDAIDARREVE
LDRFIFGLGIRHVGETNARLLARSYGTLDHFEEQMRAAADREDEAYAELLSIDGVGEVLA
ESIVDFFAEKHNREVLDGLREAGVKGVPLPKQETSSPVAGKTVVFTGSLEKMTRSEAKAR
AEQLGAKVAGSVSAKTDILVAGADAGSKLAKARELGIEILDEDQWIELAG
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgaaacggaaaagcttcgatgaggcgctggcgcagaaggatgtcgatcatctg
acgctggaagaggcgccggaagagcttgagcggcttgccgccgagatcgagaagcacgac
aagctttactaccagaaggatgcgccgcgtatttccgatgcggaatatgacacgctgcgc
cgccgcaacgaggccatcgaggcgcgctatcccgagcttgtgcgcgaggacagcccgagc
caccgcgtcggcgcgcagccggcggacggcttcggcaaggtcgtgcacaaggtgccgatg
ctgtcgctgtcgaatgccttcgacgatgaagatgtgcgcgactttgccttgcgcatcagg
cgctttctcaacctgaaggaagaagacatcctgcccatcacggcggagccgaagatcgac
ggcttgtcggcggcgctgcgctacgagaagggcaagttcgtgatgggcgcaacgcgcggc
gatgggcgcgagggcgagaacgttacggagaacctgaagaccatcggcgacattccggcg
gagctgaagggaaagaacattcccgatgtcgtggaagtgcgcggcgaagtctatatgagc
catgaggatttcgcagcgttgaacgagcggcagcgcgaggcgggcaagcccgtcttcgcc
aatccgcgcaacgcggcggcaggctcgctccgccagctcgatgcaaagatcaccgccagc
aggccgctccgtttcttcgcctatacatggggcgaaatgtcggaccttccggcggatacg
caatccggcgtcatggatgcgttccgcaaatggggcttcacggtcaatccgctgttcggc
cgctgcgataccgtggaagcattgatcgacttctatcacgacatagaagagcgccgcgcg
acgctcggatacgacattgacggcgtggtctacaaggtcgacaggctcgactggcagaac
cgcctcggcttcgtctcgcgttctccgcgctgggcgctggcgcacaagtttccggccgag
caggcaatgacagtgctggagaagatcgagatccaggtcggccgcaccggcgcgctgacg
ccggtcgcgcgcctcacgccggtcacggtcggcggcgtcgtggtgtcgaacgcgacgctc
cacaatgccgacgagatcgagcgcctcggcgtgcggccgggcgatacggtggtggtgcag
cgcgcgggcgatgtcatcccgcagatcgtgcgcgtggtggaggatcgtccgcgcgggaaa
aagaagttcgtgtttcccgacacatgccccgaatgcggcagccacgccgtgcgcgaggtg
aacccgaagacgggcaagctcgatgccgtggcccgctgcacgggcggcctcgtctgcccg
gcgcaggcggtggagcggcttcgtcactttgtatctcgcaatgccttcgacatagaaggg
ctcggcgagaagcagattgccgctttctttgaggacggcctcatcaagaagccggacgac
atcttcacgctggcggcgcgcgacgcgaaaagcctcaagaagctgaaggaccgcgaaggc
tggggcgcgacatccgcgcgaaagcttttcgacgccatcgatgcgcggcgcgaggtggag
cttgaccgtttcatcttcgggctcggcattcgccatgtcggcgagaccaatgcgcggctg
ctggcgcggagctacggcacgctcgatcatttcgaggagcagatgcgcgcggcggcagac
cgcgaggacgaggcctatgccgagcttctctccatcgacggggtgggcgaggtgctggcg
gagtcgatcgtggatttcttcgccgaaaaacataatcgcgaggtgctcgacgggctgcgg
gaggcaggggtaaagggcgtgccgctgccgaagcaggaaacctcctcccccgtcgccggc
aagaccgtggtcttcaccggctcgctcgaaaagatgacgcggtccgaggccaaggcgcgg
gcggagcaactgggcgccaaggtggcgggcagcgtttcggcgaagacagacattcttgtg
gccggggcggatgcagggtcgaagctcgccaaggcgcgggaactcggcatcgagatcctc
gatgaagaccaatggatcgagctggcgggctga
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