Parvibaculum lavamentivorans: Plav_2485
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Entry
Plav_2485 CDS
T00580
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pla
Parvibaculum lavamentivorans
Pathway
pla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plav_2485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pla03019
]
Plav_2485
Enzymes [BR:
pla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Plav_2485
Messenger RNA biogenesis [BR:
pla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Plav_2485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
Helicase_RecD
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABS64094
UniProt:
A7HW11
LinkDB
All DBs
Position
complement(2687160..2688506)
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AA seq
448 aa
AA seq
DB search
MTTVTFADLGVAEPLCRALAANNYTNPTPIQAQAIPALLEGRDLLGLAQTGTGKTAAFAL
PILQILAAANEKRQPKEARALILAPTRELAVQISQSIESYGKNFKLRHTVIFGGVNQFRQ
VKAMTAGVDIVVATPGRLLDLMNQKHVNLSRTSLLVLDEADRMLDMGFIRDVRKIIAAMP
RQRQSLLFSATMPSSIQHLADEILREPVRVEVTPEVVTVDKIDQRVLHVDGKRKRELLAK
LLDNSELSRVIVFTRTKHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDMFRNGKARV
LVATDIAARGIDVSDITHVINYELPNEPESYVHRIGRTARAGKSGIALSFCDASERSHLR
SIEKLTKRPLTVMDTTEWLGEQVAVPAGEPMAKRAGNRNGGGPRNGNSNRQPGKPRRFGG
KPGGGAGNRGQKPGQKGGQQSRRQSTAS
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgtaacttttgcggatcttggcgttgccgagccgctgtgccgcgcccttgct
gccaacaactacaccaacccgacgccgattcaggcgcaagccattcccgccctgctggaa
ggccgcgacctgctgggcctcgcccagaccggcacaggcaagaccgccgctttcgcgctg
ccaatactccagatacttgccgccgccaacgagaagcgccaacccaaggaagcccgcgcg
ctcattctcgcgccgacgcgcgaactcgcggttcagatcagccagagcattgaaagctat
ggcaagaatttcaagctgcgccacacggtcatcttcggcggcgtgaaccagtttcgccag
gtaaaggcgatgacggccggcgtagacattgtggtggcgacaccgggccgcctgctcgac
ctcatgaaccagaagcacgtcaatctgagccgcacgtcccttctcgtgctcgacgaagct
gaccgcatgctggacatgggcttcatccgcgacgtgcggaagatcattgccgcgatgccg
cgtcagcgccagtcgctgctcttctcggcgacgatgccttccagcatccagcatcttgcg
gacgagatccttcgcgagcccgtacgtgtcgaagtgacgccggaagtcgtgacggtcgac
aagatcgaccagcgggttctccatgtggacggcaagcgcaagcgcgagcttctggcgaag
ctgctcgacaattcggagctttcgcgcgtcatcgtcttcacgcgcaccaaacattgcgcc
aaccgcgtgagcgaacagctggacaagtctggcgtgctctcggaagccattcacggcaac
aagtcgcagggcgcacgccagcgcgcgctcgacatgttccgcaacggcaaggcacgcgtc
cttgtcgcgacagacatcgccgcgcgcggcatcgacgtctcggacatcacgcatgtcatc
aattacgagctgccgaacgagccggaaagctatgttcaccgcatcggccgtacggcccgc
gcgggcaagagcggcattgccctctccttttgcgatgcttccgaacgttcgcaccttcgc
agcatcgagaagctgacgaaacgcccgttgacggttatggacaccacggaatggctcggc
gagcaggtagccgttcccgccggtgaacccatggccaaacgtgcaggcaatcgcaatggc
ggcggcccccgcaacggcaacagcaatcgccagccgggcaaaccgcgccggtttggcggc
aagcccggtggtggcgccggcaatcgcggccagaagcccggtcaaaagggtggtcagcag
agtcggcgtcagtcgaccgcttcctga
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