Plantactinospora sp. BB1: C6W10_29055
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Entry
C6W10_29055 CDS
T05391
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plat
Plantactinospora sp. BB1
Pathway
plat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C6W10_29055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plat03400
]
C6W10_29055
Enzymes [BR:
plat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C6W10_29055
DNA repair and recombination proteins [BR:
plat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C6W10_29055
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DUF5415
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AVT41897
UniProt:
A0A2R4FWK8
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All DBs
Position
6669398..6670351
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AA seq
317 aa
AA seq
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MPGTPVKPMLAVTGELPAGPGWVHEFKWDGVRAVSDFAGDELRLYARSGVQITAAYPELA
PLGAQLAQRGLADAVLDGEVVVLTEQGQPSFTALAERMHVREPARAARLAVSLPVTYMIF
DLLRRDGTDLTGWPYQRRREALESLGLAGPRWAVPPVFPDGRATYQAAGEHGLEGVVSKR
VDAVYRAGVRSPDWVKVKLEVTDDFVVGGWRPGVRRIGGLLVGVPAPDGGLVYRGRVGGG
IGAAIERELLAVLEPLRNGTSPFVTPVPREDARGAIWVTPQIVVEVKYGQRTPDGRLRFP
RIRRLRTDKTVADVDGA
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggcaccccggtcaagccgatgctcgcggtcaccggggagctgcccgcaggcccc
ggctgggtgcatgagttcaagtgggacggggtgcgggcggtctccgacttcgccggtgac
gagctgcggctctacgcgcgctccggggtgcagatcaccgccgcctatccggaactcgcc
ccgctgggcgcccagctcgcgcagcgcgggctggccgacgcggtgctggacggcgaggtg
gtggtgctgaccgagcaggggcagccgtcgttcaccgcgctcgccgagcggatgcacgtg
cgggagccggcccgggccgcccggctggcggtgagcctcccggtgacgtacatgatcttc
gacctgctgcggcgggacgggacggacctgaccgggtggccgtaccagcgccgccgggag
gcgctggagtcgctcggcctggccgggccgcgctgggcggtaccgccggtcttcccggac
ggccgggccacctaccaggcggccggcgagcacgggctggagggcgtggtgtcgaaacgg
gtcgacgccgtctaccgggccggggtccggtcgccggactgggtgaaggtgaaactggag
gtcaccgacgacttcgtggtcggaggctggcggcccggcgtacgccggatcggtgggctg
ctggtcggagtgccggcgccggacggcggcctggtctaccggggtcgggtcggcggcggc
atcggcgcggcgatcgagcgggaactgctggccgtactggagccgctgcgcaacggaacc
tcgcccttcgtgaccccggtgccccgggaggatgcccggggcgcgatctgggtaactccc
cagatcgtggtggaggtgaagtacggccagcgcacgccggacggtcggctgcggttcccg
cggatccgccggctgcgcaccgacaagacggtggcggacgtcgatggcgcgtga
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