Plectropomus leopardus (leopard coralgrouper): 121951705
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Entry
121951705 CDS
T07454
Symbol
lig1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03030
DNA replication
plep03410
Base excision repair
plep03420
Nucleotide excision repair
plep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121951705 (lig1)
03410 Base excision repair
121951705 (lig1)
03420 Nucleotide excision repair
121951705 (lig1)
03430 Mismatch repair
121951705 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plep03032
]
121951705 (lig1)
03400 DNA repair and recombination proteins [BR:
plep03400
]
121951705 (lig1)
Enzymes [BR:
plep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121951705 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
121951705 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
121951705 (lig1)
DNA replication proteins [BR:
plep03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
121951705 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
121951705 (lig1)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
121951705 (lig1)
NER (nucleotide excision repair)
Other NER factors
121951705 (lig1)
MMR (mismatch excision repair)
Other MMR factors
121951705 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
121951705
NCBI-ProteinID:
XP_042354085
LinkDB
All DBs
Position
12:complement(22963392..23025491)
Genome browser
AA seq
1015 aa
AA seq
DB search
MQRSIASFFQPKCKDKDIQKKTTDEPVKKPVKSPLKVQNGVQEADSPIKKVAKRTRQILD
SDDDEAPVVKEQVVTKGQGDKEAVGKTGKKDDVFKAVPTPLSPPPAPATPVTPATPASSA
SPGTPSTPNSISPSAIAKRKTARKMFPKRRLDESGSGSESQKDEAEAKEEKGQQNKRPRV
ESSGSSAGNTDEPMEXGAKEERVEKAVTEADSHDDDDDEEVEKEKKKEEEEKAEEEEERL
KRESSDEKEKKAEGGAEKKNEAKEKTDDEKGPAVAKKKKEVVEKDTREGEESPKSQTARK
QKEAKEQKDKEPPKKAPISSFFAPRKAAVKAEKNEGEKDKCRERKTSAEESKDAKGESTS
GQTDYDPSRPNYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLL
LSPDDLLCCVYLCLNQLGPAYLGMELGIGETVLMKAVAQATGRQLDKIKAEAQEKGDLGL
VAESSRSNQRTMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARY
IVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSL
ILKQTYCEMPNYDVLIPVLLKEGIDDLPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEA
AFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTSKYPDIISRIPKVKKDTVVSCVLDSE
AVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRAL
LRESFSEVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHN
WLKLKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDDENEEFQSVCKIGTGFK
DEDLEQHYKFLKEHILPKPRAYYRIDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGM
VDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaagtgcaaagacaaggatattcagaag
aaaactacagatgaaccagtgaaaaagcctgtcaaaagccccctcaaggtgcagaacggt
gtccaggaagctgattcacccatcaagaaggttgccaaacgcacccgtcagatcctggac
agcgacgatgacgaggctccggttgtgaaagagcaagtcgttactaagggacaaggagac
aaagaagctgttggtaaaactggaaagaaggatgacgtctttaaggcagttcccacccct
ctgtcccctccacctgccccagcgacccctgtgaccccggcaaccccggcctcctcggcc
tcacctgggacccccagcaccccaaactccatctccccctctgcgattgctaaacgcaag
actgcgagaaagatgttccccaagaggaggcttgatgagagcgggagtggcagcgagagt
cagaaagacgaggccgaggccaaggaggagaagggtcagcaaaacaaacgaccccgtgtg
gagagcagcggcagcagcgcagggaacaccgatgaacccatggagngaggagcaaaggaa
gaaagggttgaaaaggcagtgaccgaggctgacagccatgatgatgatgatgatgaggag
gtggagaaggagaagaagaaagaggaagaagagaaggccgaggaggaggaggagcggctg
aagagagagagctctgatgagaaagaaaagaaagctgaggggggggcggaaaagaaaaat
gaagcaaaggagaagacggatgatgagaaaggccccgctgttgccaagaaaaagaaggag
gtggttgaaaaggacacgcgagagggagaagagagcccaaaaagtcaaacagcgagaaag
cagaaagaagcgaaagagcagaaagataaggagccgcccaagaaagcccccatcagcagt
ttctttgctccaagaaaagctgcagtgaaggcagagaagaacgaaggagaaaaagacaag
tgcagagagaggaagacttcagcagaggagagcaaagacgcaaaaggtgagtcaacctcg
ggacaaacagactacgatccgtccaggcccaactaccatcctgtggaccacgcctgctgg
aagcaaggccaaaaagtgccgtacttggcggtggctcgcacctttgagaagattgaagag
gactctggcaggctaagaaacattgagacgctgtcgaacctgctccgctccgtgctgctg
ctctctccagacgacctgttgtgctgtgtgtacctgtgtttgaaccagctgggtcctgcc
tacctggggatggagctcggcattggagaaacggtgctgatgaaagctgttgctcaagca
actgggcgacaattggacaaaatcaaggcagaggcacaagagaaaggcgatttgggcctc
gtggccgagagctcccgtagcaaccagcgcacgatgttccagccagccagtctgacagca
gggggcgtgttcaggaaattgaaggaaatcgccagcatgagtgggaactcggccatgaat
aagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttctgaggcccgctac
atagtcaggtccctggctgggaagctgaggataggcctggctgagcagagtgtcctatca
gcactcagccaggccgtgtgtctgaccccccctggacaaggtttccctcccgctgtgatc
gacgcggggaaggggatgagcgccgagagcaggcgggcctggatcgaagagaagagtctc
attctcaaacagacttactgcgagatgcccaattacgacgtccttatccccgttctgctg
aaagaaggcatagacgacctacccaatcactgcaagctcactccaggtgtaccactgaga
cccatgttggcacaccccaccaagggcgtcggcgaggtgatgaagaggtttgacgaagca
gcattcacctgcgagtacaaatacgacggagagcgtgcacagattcacattctggagaat
ggcgaggttcgaatattcagtcgtaaccaggaagacaacaccagcaaataccccgatatc
atctctcgcattcccaaggtgaagaaagacactgtggtgtcttgcgtcctggactctgag
gctgtggcctgggatcgtgagaagaaacagatccagcccttccaggtcctcaccacccgt
aagagaaaggacgtggatgcttcggagatcaaagtccaagtgtgcgtctacgcctttgac
ctcctctatctcaatggagagtccctggtgcgacagccgttgtgtcggcgtcgggctctg
ctgagagaaagcttctcagaggtggagggggagtttgtgttcgctcgatccatcgactcc
gacaacaccgacgccatcgccgagttcctggagcagtctgtccgagactcctgcgaaggt
ctgatggtgaagactttggagaaggatgccacctatgaaattgcaaaacgctctcacaac
tggctaaagctgaagaaggactacctggacggggtgggtgacacagtggacctgtgtgtg
attggtgcctatctggggaaaggcaagaggacgggcacctatgggggcttcctgctggcc
tgctacgatgacgagaatgaggagttccagtccgtctgcaagatcgggacaggcttcaag
gatgaagatctggagcagcattacaagttcttaaaggagcacattctgcccaagccccgt
gcctactaccgcattgaccagtcagcagagcctgacgtgtggctggacgctgtgcaggtt
tgggaggtgaagtgcgccgacctgtcgctgtctccagtctacaaggccgctatgggaatg
gtggatccagaaaagggcatttctctgaggtttccccgcttcctcaggatcagagacgac
aagaagcctgaggacgctacaactggagctcagattgctgatttgtacaagaagcagcag
cagattcagaatcaaggagagaaagctgacccggaggattactactga
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