Pantoea ananatis LMG 5342: PANA5342_1079
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Entry
PANA5342_1079 CDS
T01728
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02688
transcriptional regulator, propionate catabolism operon regulatory protein
Organism
plf
Pantoea ananatis LMG 5342
Brite
KEGG Orthology (KO) [BR:
plf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plf03000
]
PANA5342_1079
Transcription factors [BR:
plf03000
]
Prokaryotic type
Helix-turn-helix
Other families
PANA5342_1079
BRITE hierarchy
SSDB
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PrpR_N
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
PAS_8
Mg_chelatase
HTH_50
DUF87
AAA_3
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
CCF08472
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Position
1119298..1121256
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AA seq
652 aa
AA seq
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MTPVNISFIVILILDEIASDKSESSMKSNEIVIFSVSKTITQRILNVLIEKQLELPVYET
GYSEVLDKANEMIRSGTKIIISRGGTAALLRSNVTIPVIEIAHDFHGIYRILKQAKNKSQ
KIAAVGFPQFCNALKHYQNMTNENLKICQVYNHYDIESVVKNLAENNYKVVIGGLTVAEM
AKKYDLNVVMGDTDNNSIEQAINEAFSLLKYIHQESLKLDMSYSAMNQSREGIMCIDQMG
EVVSINNRGKTLFQCHAGDKIYRKDAFKEVYRSIIDESDVKEMIVELDGDFICTSIKHYT
KRQDGYSIVTGFIQGKSQWRNSADKKIKQQGFYTRYAFDDIIGHSASINIAIDKAKLCAR
HDAPIHILGDTGTGKELFAQSIHHHSIRKHGPFIAVNCAAIPENLLESELFGYAEGAFTH
ARKGGKPGVFEMAMKGTVFIDEISEAPLNVQVKLLRVLQEKQFVRLGGEALIAADFRLIT
ASNKDLHVLVQSGVFRQDLYYRINILELRLPALAEREGDIELLARHLLHQQGKEIAFTPD
ALDVLRRHSWPGNIRELQSVIYRLAVFHDRDVVDKDELLRAVRVADDFGSASQQSLLCEP
AESETHLLKKQEKHLITRIITQTQGDKVRAAAILGISPTTLWRKLKEYDLNS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctgtcaatatctcattcatcgttatccttatactcgatgaaatagcgagcgac
aaaagcgaatcttcaatgaagtctaatgaaatcgtcattttctccgtttcaaaaaccatc
acccaacgcattttaaatgttcttattgaaaagcagcttgaactgccagtgtacgaaacg
ggctattcagaagtattagataaagcaaatgaaatgattcggtctggaacgaaaatcatt
attagtcgtggcgggactgccgcgcttcttcgcagcaatgtgaccattccggtgatcgag
atagcgcatgattttcatggcatttatcgtattcttaagcaggcgaaaaataaatcgcaa
aaaattgctgcggtaggttttccccaattttgtaacgcgctcaagcattaccaaaacatg
accaatgaaaatttaaaaatctgtcaggtctataatcactatgacatcgaaagtgttgtg
aaaaatcttgcagaaaataactacaaagtcgttataggcggtcttacggttgcagagatg
gcgaagaaatatgacctcaatgttgtgatgggggacacggataataattcaattgagcaa
gccatcaacgaggccttcagtttgctgaaatatatccatcaggaaagtctgaagttggat
atgagctattccgcgatgaatcagtctcgtgaaggcattatgtgcattgaccaaatgggg
gaggtggtgagcattaacaaccgagggaaaaccctttttcagtgtcatgctggcgataaa
atttaccgcaaagacgctttcaaagaggtttatcgctcaattatcgatgagtcagacgta
aaggaaatgatcgtagaactcgacggtgattttatctgtacctcaataaagcattacacc
aagcgccaggatggctattccatcgttaccgggtttattcaggggaagagccagtggcga
aacagtgcagacaaaaagataaaacagcaaggtttttatactcgctacgcttttgatgac
attattggtcattcagccagcattaacatcgcgattgataaagccaagctgtgcgcgcgt
catgatgcccccattcatattttgggtgataccggcaccggcaaagaactctttgcgcag
agtattcatcatcacagcatccgaaaacatggcccctttatcgcagtcaattgtgctgcc
attcctgaaaacctcctggaaagcgagctgtttggctatgctgagggggcatttactcat
gcgcggaaaggtggcaagcccggcgtgttcgaaatggcgatgaagggaacggtttttatt
gatgagatcagcgaagcgccgctcaatgtgcaggttaaattactgcgtgtcctgcaggaa
aagcagtttgtccgtctggggggagaggcgctcattgcggcagactttcggctgattacc
gccagcaataaagatctgcatgttttggttcagtcgggcgtttttcgccaggatctttac
taccgaatcaatattctggaactcaggctgcctgcactggctgagcgcgaaggggatatt
gaattactggcgcggcatttactgcatcagcagggaaaagagatcgcgtttactccggat
gcgctggatgtcttaaggcggcacagctggccgggtaacatccgcgaattacagtcggtt
atctacaggctggccgtgtttcacgatcgcgatgttgtagacaaagacgaactgctcagg
gccgtgcgggttgccgatgattttggctctgccagccagcaatccctgctttgcgagcct
gcggagagtgaaacccatttgcttaaaaagcaggaaaaacaccttatcacgcgtatcatc
acccaaactcaaggggataaggtcagggcggcagccatccttggcatcagcccgaccacc
ctgtggcgtaagttgaaagagtacgatcttaacagctaa
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