Candidatus Planktophila limnetica: PHILAsVB114_00350
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Entry
PHILAsVB114_00350 CDS
T05067
Name
(GenBank) recombination protein RecR
KO
K06187
recombination protein RecR
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PHILAsVB114_00350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plim03400
]
PHILAsVB114_00350
DNA repair and recombination proteins [BR:
plim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PHILAsVB114_00350
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PHILAsVB114_00350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Toprim_4
RecR_HhH
Toprim
RecR_C
RecR_ZnF
HHH
HHH_5
DZR
PHF5
zinc_ribbon_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ASY28325
UniProt:
A0A249LHG8
LinkDB
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Position
67101..67700
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AA seq
199 aa
AA seq
DB search
MYEGAIQDLIDALGRLPGVGPKSAQRIAFHILQSDADIAAALVDAIRTVKERVKFCTQCG
NVSEETECRICRDPRRDNSQICVVEESKDVIAVERTREFRGKYHVLGGAISPIDGIGPDQ
LRIKELMSRLSDSAITEVILATDPNLEGEATATYLARLIKPLDIKVSRLASGLPVGGDLE
YADEVTLGRAFEGRRNVEN
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaaggtgcgatacaagatttaattgatgccttgggtcgcttgcctggtgtgggt
ccaaagagcgcgcagcgaattgcttttcatattctgcaatcagatgccgacattgctgca
gcattggttgatgcaattcgtacggtgaaagaacgcgtgaagttttgcacgcagtgcgga
aatgtttctgaagaaacagagtgccgtatttgtcgcgacccacgtcgtgataactcacag
atttgtgttgttgaagagagtaaagatgtgattgcggtggagcgcacgcgagaattccgt
ggcaagtaccacgtgctcggtggagcaattagtcctattgatggaatcggacctgatcaa
ttaagaattaaagagctgatgagtcgtttatctgactcagcgattactgaagttattttg
gcaacggatccaaacctcgaaggtgaggcaacggccacctatttagctcgattgattaag
ccgctagatataaaggtctctcgtttggccagtggtctgccagtgggcggagaccttgaa
tacgccgatgaagttacccttgggcgagcatttgaaggcagaaggaacgtcgaaaactaa
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