Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_14035
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Entry
A4R40_14035 CDS
T05478
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plum
Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4R40_14035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plum03400
]
A4R40_14035
Enzymes [BR:
plum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4R40_14035
DNA repair and recombination proteins [BR:
plum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A4R40_14035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWK42532
UniProt:
A0A6L9JII1
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All DBs
Position
3341617..3345063
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AA seq
1148 aa
AA seq
DB search
MSSKYRYELPERRGDNRQLGQLTGAACAVECAEIIERHQGPVVLITKDMQNALRLHDEIH
QFTDCSVDLLSDWETLPYDSFSPHQEIISNRLSTLYRLPTMTKGVLILPINTLMQRVCPH
EYLNGHALVMHKDQRLSRDKLRTELEQAGYRSVEQVLEHGEFATRGALLDLFPMGSEHPY
RIDFFDDEIDSLRIFDVDSQRTLTEVKQINLLPAHEFPTDKETIELFRSQWRERFEVRRD
NEHIYQQVSKGTLPAGIEYWQPLFFNQPLPSLFDYLPDNTLLISQEINHSAERFWQDIQQ
RFESRKIDPMRPLLPPEELWLPADNLFSALKNWPRIQLKTEELSKKASHVNLDYQLLPDL
SVVAQNKAPLDKLRRFLEQFSGRVIFSVESEGRKETLQELLSRIKIKPIKISKLHQAQQP
GHFLMIGAAEHGFIDTKNELALICESDMLGERVVRRRQDTRRTINTDTLIRNLAELRPSQ
PVVHLEHGVGRYQGLTTLEAGGIKAEYLILSYAGNDKLYVPVSSLHLISRYAGGADENAP
LHKLGGEAWNKARQKAAEKVRDVAAELLDIYAHRAVKPGFAFKHDWEQYQLFCQSFPFET
TPDQEQAINAVLNDMCQPIAMDRLICGDVGFGKTEVAMRSAFLAVHNDKQVAVLVPTTLL
AQQHFDNFRDRFANWPVRIEMISRFRSAKEQQQIVEMAAEGKVDIIIGTHKLLQSDLRWK
DLGLLIVDEEHRFGVRHKEQIKAMRADVDILTLTATPIPRTLNMAMSSMRDLSIISTPPA
RRLAVKTFVREYDSLLVREAILREVLRGGQVYYLYNDVENIEKAKLRLEELVPEARIAIG
HGQMRERDLERVMTDFHHQRFNVLICTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
EQSGQMTTIGFTLYMELLESAVDALKAGRKPSLEDLTNSQTDVELRMPILLPDDYIPDVN
MRLSFYKRIASAKDASELAELKVELIDRFGTLPDPGRHLLHSAAIRLLAQKLGIKRIEAH
EKGGFIEFSEKNKVDPTYLIGLLQKQPEIYRLDGPAKLKFIIDLNERTARLEFIQQLLDT
FEHHQICS
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaaaatatcgttatgaacttcccgaacgtcgcggtgataaccgtcaattaggc
caacttactggtgccgcttgcgcggtagagtgtgctgaaattatcgaacgccatcaaggc
cctgtcgtactgataaccaaggatatgcaaaacgccttacgtctgcatgatgaaatccat
cagtttaccgactgctccgttgatctcctttccgattgggaaacactgccgtatgacagt
ttttctcctcatcaggagatcatttccaaccgtctgtctacactttaccgtctgccgacg
atgaccaaaggtgttttaatcctgccgataaataccttaatgcaacgggtttgccctcat
gagtaccttaacgggcatgcactcgttatgcacaaagatcagagactctcacgggataaa
ctccgtactgaattagaacaggctggctatcgtagtgtcgaacaagttcttgaacacggc
gaattcgctactcgtggcgcactacttgatcttttccctatgggaagtgagcatccctat
cgtattgattttttcgatgatgaaatcgacagcttacgcattttcgatgttgacagccaa
cgcacgctgactgaagttaaacaaatcaacctactgcctgctcatgaattcccaaccgat
aaagagacaattgaactgtttcgcagccagtggcgggaacgttttgaagtccgtcgtgac
aatgagcatatttatcagcaagtcagtaaaggcacgttaccggccgggatagaatactgg
caaccgttgttttttaaccaacccttgccttcattgtttgattatctacccgacaacact
ttgcttatcagtcaagaaataaaccattccgccgaacgtttttggcaagacatccaacaa
cgctttgagagccgtaaaattgacccaatgcgccctctcttacccccagaagagctttgg
cttccggctgacaatttattctcagcgctaaaaaactggccccgcattcaacttaaaaca
gaggaattgagcaaaaaagcgagtcacgtaaatcttgattatcaactgctgcctgatctc
tccgttgttgcgcaaaataaggcacctctggataagcttcgccgattccttgaacaattc
agtggccgcgttattttctctgttgagagcgaaggacggaaagaaacgttacaggaatta
ttgtcacgaataaagattaaacccattaaaatcagcaaattgcatcaagcacaacagcca
ggtcactttttgatgattggtgccgctgaacatggttttatcgatacaaagaatgaactg
gctctaatctgtgaaagcgacatgcttggtgaacgtgttgtccgccgccgtcaagatacc
cgtcgcacgattaataccgataccctgatccgtaaccttgcagaattacgccccagtcag
ccagtggtccatttggaacatggcgttggtcgttaccaggggctaactacgctggaagca
ggtggtatcaaagctgaatatctgatcttaagttatgccggtaacgacaaactttatgtt
ccggtctcttccctgcatttgatcagccgctacgcagggggtgctgatgaaaatgcccca
ttacataaattgggcggagaggcatggaacaaagcccgccagaaagctgccgaaaaagta
cgcgatgtcgctgcggagttgcttgacatttatgctcaccgcgccgtaaaaccaggattt
gcgtttaaacatgattgggaacaataccaattgttctgtcaaagctttccatttgaaaca
acgccagatcaggaacaggcaattaacgcagttctgaatgatatgtgtcagccaatcgcg
atggatcgcttaatttgcggtgatgtaggctttggcaaaaccgaagttgcaatgcgctcc
gcatttctggcagtccataatgacaagcaggtggcggtcctggttccgacaaccctgttg
gctcagcaacattttgataatttccgcgaccgttttgctaattggcctgtacgtattgag
atgatatcccgtttccgcagcgccaaggaacagcaacaaatcgttgaaatggcagccgaa
ggtaaagtcgatattattattggtacgcataagttgctacaaagcgacttgcgctggaaa
gacctgggtttgttaattgtggatgaagagcatcggtttggtgttcgccacaaagagcag
atcaaagccatgcgtgccgatgtcgatattctgaccctcaccgcaacccctattccacga
acgctcaatatggcaatgagtagtatgcgggatctctcaattatttcgaccccgcccgct
cgccgtctggcagtcaaaaccttcgtgcgcgaatatgacagtttgctggtgcgagaagcc
atactgcgtgaagttttgcgcggtggtcaagtctactacctctataatgatgttgaaaat
attgagaaagcgaagctgcgtcttgaagaattagtaccagaagcacggatcgccattggt
catgggcagatgcgtgaacgggatttggaacgggtgatgaccgatttccatcatcaacga
tttaatgttctgatttgtaccacaattattgagacaggcatcgatattccaagcgccaat
accatcattattgaacgtgctgaccattttggcctggcccaactgcaccaattgcggggg
cgtgtcggacgttctcaccatcaggcttatgcttacctgctgacaccacatccgaaagca
atgacaaccgacgcacacaaacgtctggaagccatcgcctcccttgaagatttaggggcg
ggttttgcactggcaactcacgatcttgaaatccgtggagccggcgaactcctaggtgaa
gaacaaagcggtcagatgacaacaatcggcttcactctctacatggagctgttagaaagt
gctgtcgatgcactaaaagcaggccgcaaaccctcacttgaagacttgaccaatagtcaa
actgacgttgaattgcggatgcctattttgttacctgatgattatattcctgatgtcaat
atgcgtttgtctttttataaacgtattgccagcgccaaagacgcatcagaattagcagaa
ttgaaggttgaattgatagaccggttcggcacattacctgatccggggcgtcacttatta
cactcagcagccattcgcctgttagctcagaaattaggtattaaacgaatagaagcccat
gaaaagggagggttcattgagtttagtgaaaaaaataaagttgatccaacttatctgatc
ggcctgttacaaaaacaacctgaaatttatcggttggatggccccgctaaacttaaattc
atcattgatctgaacgaaagaacggcacgcctggaattcattcagcaattacttgatact
tttgaacatcatcagatctgctcttaa
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