Paenibacillus lautus: D5F53_01100
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Entry
D5F53_01100 CDS
T05701
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
plw
Paenibacillus lautus
Pathway
plw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D5F53_01100 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plw03021
]
D5F53_01100 (rpoB)
03400 DNA repair and recombination proteins [BR:
plw03400
]
D5F53_01100 (rpoB)
Enzymes [BR:
plw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D5F53_01100 (rpoB)
Transcription machinery [BR:
plw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D5F53_01100 (rpoB)
DNA repair and recombination proteins [BR:
plw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D5F53_01100 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AYB41975
UniProt:
A0A2A5LAM6
LinkDB
All DBs
Position
242260..245805
Genome browser
AA seq
1181 aa
AA seq
DB search
MAGHLVQYGRRTRRSYARINEVLEVPNLIEIQQKSYEWFLEEGLREMFQDISPIQDFTGN
LVLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTE
TGTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKTTYTATVIPNRGAWLELEMDAKDIIY
VRIDRTRKIPVTVLLRALGFGTDAEILDLLGNDEYIQNTLDKDNTDSTEKALIEIYERLR
PGEPPTLENAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAESLIDIDTGE
IVAEAGQTVDRRLLDEIMPYLEKSVGFKNYHVAGGVMDSEDIPLQTIDVFSPIEDGKVVK
VIANANIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH
KRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGF
IEAPYRWVDPKTGKVTDQIDYLTADEEDNYIVAQANAELNEDGTFADEMVIVRYNKQSDN
ILPMPSDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVG
TGMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVENIDGQEVKGDIVKYKLHKFMRSN
QGTCINQRPIVKRGDVIKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSE
KLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNLDERGIIRIGAEISAG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGD
ELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNP
LGVPSRMNIGQVLEVHLGMAALQLGIHVASPVFDGASEYDVFDTMEEAGMQRNGKTVLYD
GRTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLG
MDVKILSENEEEIEMKELDDEDDAQGDKLSLNLEGAEVGVE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatcttgttcaatatggtcgacgcactcggcgaagttatgctcgtattaac
gaggtactcgaagttccgaacctgattgaaatccaacaaaaatcttatgaatggtttttg
gaggaaggactccgcgaaatgttccaggacatctcgccgattcaggatttcacgggcaat
ttggtgctagagttcattgactacagccttggagaaccgaaatacaccgtcgatgacgcg
aaagaacgcgacgttacttatgcggcgccgctccgcgtgaaagtccggctcattaacaag
gagaccggagaggtcaaggagcaggaagtgttcatgggagacttcccgttaatgacggaa
accggaacattcattatcaatggtgccgaacgggttattgtcagccagttggttcgctct
cccagcgtctatttcagcacgaaagtggataaaaacggtaagacgacgtacactgcaaca
gtgatccctaaccgcggcgcttggctggaactggagatggacgcgaaggacattatttat
gtccggatcgaccgcacccgtaaaatccctgtaacggtgcttttacgtgcacttggtttt
ggcacagatgccgagattttggatcttctgggcaatgatgaatatattcaaaatacgctg
gataaagacaacacggactccacggaaaaagcgctcattgaaatctatgaacgccttcgc
ccgggcgagccgccaacactggagaatgcgaagagccttctcgttgcgcgtttcttcgat
ccgaagcgttatgatttggctaacgttggtcgttacaagatcaataagaagcttcatatt
aagaaccgtctctttaatcaacgtttggcagaaagtttgatagacatcgatacgggtgag
atcgttgcggaagccggtcaaaccgtagaccgtcgtcttttggacgagattatgccttac
cttgagaagagcgtaggcttcaagaattatcatgttgccggcggcgtgatggacagcgag
gatatcccgctgcaaacgatcgacgtattctctccgatcgaggacggaaaagttgtgaag
gtcatcgcgaacgcaaacatcgataaatccgtgaagcatattacgcaggcggatatcatt
tcctccatcagctacttcatcaacctgctgcatggaatcggcaatacggatgatatcgat
cacctgggtaaccgtcgtctgcgttccgtgggcgaattgctccaaaatcagttccgtatc
ggtttgtcccggatggaacgcgttgttcgcgagagaatgtcgatccaggatgcaaacgtg
attacgccgcaggcgctgatcaacatccgtccggttatcgcatcgatcaaagagttcttc
ggcagctcccagttgtcccagttcatggatcagacgaacccgctggcggaactgacgcac
aaacgtcgtctgtctgcactcggaccgggcggtttgacgcgtgagcgcgcgggctttgag
gtgcgggacgttcaccacagtcactatggccgtatgtgtccgatcgagacaccggaggga
ccgaacatcggtctgatcaactccttgtcgacgtttgcacgcatcaacgagtatggcttc
atcgaagctccgtaccgttgggtggatccgaagaccggtaaagtcacggatcaaatcgat
tacctgactgcagacgaagaggataactacatcgttgcccaggcgaacgccgaactcaac
gaagacggtaccttcgctgacgaaatggttatcgtccgttataacaagcaatccgacaac
atccttccgatgccgagcgaccgtgtagactacatggacgtatcgccgaagcaggtcgtg
tcggtagcgacggcgctcattccgttcctcgagaacgatgactccaaccgcgcgctgatg
ggatcgaacatgcagcggcaggctgttccgcttcttattcctaaggctccgctcgtcgga
accgggatggagcataagtctgcgaaagactccggtgtatgtattgtatccaaatacgac
gggattattgaacgttcatccgccaacgaaatctggctccgccgcgtggaaaatatcgac
ggacaagaagtcaaaggcgatattgttaaatataaattacacaaatttatgcgttcgaac
caaggaacatgcatcaatcagcgtccgatcgtcaagcgtggcgatgtgatcaaaaaaggt
gacatcctggctgacggaccatccaccgagatgggcgaattggcactgggccgcaacgtt
gtcgttgcgttcatgacttgggaaggctacaactacgaggatgcgattcttctctccgag
aagctggtcaaagaggacgtgtacacttcgatccatatcgaggagtacgaatccgaggct
cgtgacacgaagctcggtccggaggaaatcacccgcgatattcctaacgtaggggaagaa
gcgctcaagaaccttgacgagcgcggaatcatccgcatcggtgccgaaattagcgctggc
gacattctcgttggtaaggtaacgcctaagggcgtaaccgagctgacggctgaagagcgt
ctcctgcatgcgatcttcggtgagaaggctcgcgaagtgcgcgatacctcgctgcgcgtt
cctcacggtagtgacggaatcatcgtggacgtgaaggtgtttacgcgtgagaacggcgac
gagttgccgccgggcgtcaaccaattggttcgcgtctacatcgcacagaagcgtaaaatc
tccgaaggcgacaaaatggccggacgtcacggtaacaaaggtgtcgttgcccgtattttg
cctgaagaagacatgccgttcctgccggacggcacgccggttcaagttgtgttgaaccct
ctgggggttccatcacggatgaacatcggtcaggtgcttgaggttcacttgggtatggct
gcgctccagctcggcattcacgtggcttcaccggtattcgacggtgcaagcgagtatgac
gtgtttgatacgatggaagaagcaggcatgcagcgcaatggtaagaccgtgttgtacgac
ggacggacgggcgaacgttttgaacgtgaagttaccgtcggcgtcatgcacatgatcaag
ctcgcgcacatggttgatgataaaattcacgcccgttccacgggaccatactccctcgtt
acgcagcagccgctgggtggtaaagcccagttcggcggacagcgcttcggtgagatggaa
gtatgggcgcttgaagcttacggtgctgcctatacgctgcaagaaattcttaccgtcaag
tccgatgacgtggtcggccgggtgaaaacctacgaatcgatcgtcaaaggcgagaacgtt
ccggagccgggtgttcctgaatcgttcaaggtattgattaaagagcttcagtctctcggt
atggacgttaaaatcctgagcgagaacgaagaggaaatcgagatgaaagaactcgatgac
gaagacgatgctcaaggtgataaactgagccttaacttggaaggcgctgaagtcggagtg
gaataa
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integrated database retrieval system
