Parus major (Great Tit): 107203913
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Entry
107203913 CDS
T04864
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107203913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107203913
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107203913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
107203913
NCBI-ProteinID:
XP_015482007
Ensembl:
ENSPMJG00000012217
LinkDB
All DBs
Position
4A:complement(18200468..18222058)
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AA seq
564 aa
AA seq
DB search
MATELEPPAAGAVSGAAPLEAEEDEEHWLYGDDTTGKQEDGPISGHTESAHPLQDAPQES
RPVNNEDREMSQHALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTG
RGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDFLALVG
GRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHATEENPIQVLGDHGSKPQPPQQ
PQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPI
PGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTV
DKGTSSSSSSHWEYSGSRRERERERERERERERDRDRDRTPTTSEYNNDDERYRYYSRER
SYDFERDYRRSRDRSREREERHRERRHRDKDDSSKHKSSRRKQHESEEGESHRRHKHKKN
KRSKEEKEASEDGAQEGEEQDTKE
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagctggagccgccggccgccggcgccgtgtcgggcgcggcgccgctggag
gcggaggaggacgaggagcactggctgtacggggatgacaccactggtaagcaagaagat
ggaccaatttctggacacacagaatctgctcaccctctgcaggatgctccccaggagagc
cggcccgtcaacaacgaggacagagagatgtcccagcatgcccttcccagtggtgaggat
gatgaggatgacagtgacagcgacagcgatgacgatgacgtgaaggtcacaattggcaac
atcaagacgggagcgccatcctacatgggaactcctatgaatctaaacttaaaaacgggt
agaggctatggagcatcagcttcagccaagttgcagcccaaaggtattgacttggatgcc
gcagggaatattaatggattgcctgtgatagaagtggatttggattcatttgaagacaaa
ccgtggaggaaaccaggtgctgatctttctgattactttaattatggattcaatgaagaa
acatggaaagcttattgtgaaaagcagcggcggcttcagctggggctggaccctgctcct
cccatcagcactgagaacaagatcacggttcagcagggaagaacaggaaatgctgaaaaa
gaagtggaaaacaacatcatcaaaacagagttcaaaacagacttcttggctctggtggga
ggacgaatgaaggctgggcctcctcccaacaggaagctgggtgggaccattgatgtgatc
gggggccaggcaggcacgatccgcagggtggaagggagacgtcgggataaacacgccacg
gaggaaaaccccattcaggtcctgggagaccacggcagcaagccccagcccccccagcag
ccccagcagccctcgcagccccagcagcctcctcagcagcagccgttcgctccaccagca
gggcctccgcctcccccgctcgccgggcctcctcctccacatttcctgcaccctcctcct
ccagtgacttctgttccacctcccctgcatcctccaggcctgccacctccaggtccaatt
ccagggttgttcccaccacctctggcaccaccaccagctctcctcatcccaaccttggat
gggcagccagccagctacaacaacaggcagccacctccctttggctacaactctgcagat
tcaggtttcatcagctacccccccatctccacgtcccacacgccctgggtgaccacggtg
gacaagggcacgagcagctccagcagcagccactgggaatactcgggctccaggcgggag
agggagcgcgagcgcgagcgcgaacgggagagggagcgagaccgagaccgcgaccgcacc
ccgaccaccagtgaatacaacaatgacgatgagcggtaccgctactacagccgcgagcgc
agctacgacttcgagcgcgattaccggcgcagccgcgaccgcagccgcgagcgcgaggag
cggcaccgcgagcgccgccaccgcgacaaggacgacagcagcaaacacaaatcctcccgc
aggaagcagcacgagagcgaggagggggagagccaccggcgccacaagcacaaaaagaac
aagcggagcaaggaggagaaggaggccagcgaggacggagcccaggagggcgaggagcag
gacaccaaggagtga
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