KEGG   Parus major (Great Tit): 107209821Help
Entry
107209821         CDS       T04864                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
pmaj  Parus major (Great Tit)
Pathway
pmaj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    107209821 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmaj03400]
    107209821 (LIG4)
Enzymes [BR:pmaj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107209821 (LIG4)
DNA repair and recombination proteins [BR:pmaj03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     107209821 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme LIG3_BRCT Tox-REase-9
Motif
Other DBs
NCBI-GeneID: 107209821
NCBI-ProteinID: XP_015495411
LinkDB All DBs
Position
1
AA seq 912 aa AA seqDB search
MASAPVPQPPPKKTVASHVPFAHLCSTLEQIQKCKSRPEKTKYFKVFLESWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILNSVFTPVKGRIHVVHKRNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKNPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLPIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNIFEDVEFCVMTGTRKYSKTELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTANTDVAQLK
EVFSRMKDNKAMPVDLIAELEERYWWNNCQLGIFRGNTVYVDCYAVVNEPESKIPGTTLS
IRALELRFYGAKVVSHLEEGVSHVVVGEDHSRVEEMKVLRRTFGKKFKIVSELWVAHSVE
EGVAENEYQYLV
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atggcttctgcacctgttccacagcctcctcctaaaaaaacggtggcctctcatgtgcct
tttgcacatctgtgttctactctggagcaaatacagaagtgcaaatctcgtccagagaaa
accaagtatttcaaggtttttctggaatcctggaggaagttccatgatgcgcttcatcaa
aaagagaaggatgtcacagattccttttacccggctatgcgacttattctcccacagttg
gaaagagagaggatggcatatggaattaaggaaactatgcttgcaaagctctatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
acaggctcacgtggagatgctggagattttgcaatgatcgcatactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacatttagatgcaata
gctaataacaatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttctatttttcatcccgatgctgctgaattgcac
aatgttactaccgatttggaaaaagtttgcagacagctgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttctctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcacccctagaaggttcgttaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttgggccatgaagtactgagcaaaagatatgaaatcttaaatagtgtatttaccccg
gtaaagggcaggatacatgttgtccataagagaaatgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaaggaattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctctgtgctgttgcggagacaccccctccaaatgaa
aaaccaaccattttccactccatatgtcgtgttggctctggctataccatgaaagagttg
tatgatctaggcttgaaactggctaaacactggaagccctaccataggaagaaccctcct
ggtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtacgagtgcatgact
tcagacatgttagaagacctcaggagcaaagcacaaggaaagctggcatctaagcacctt
cctatagatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagccgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatatatttgaagatgttgagttttgtgttatgacaggaacaagaaaatactcaaag
actgagctggaaagcagaatagcccaatgtggtggcagtgtggtacagaacccggggccg
gagacatactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttct
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaagagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgcgcagctcaag
gaggtattctcaagaatgaaagacaataaggcaatgcctgtggacttgattgcagagcta
gaagaacgttattggtggaacaattgtcagcttggcatattcagaggaaacactgtttat
gtggactgttatgctgttgttaatgagcctgaaagcaaaatccctggaactacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagatcattcacgggtagaagagatgaaagtgctcagg
aggacatttgggaaaaaatttaaaattgtatctgagctgtgggtagcacactcagtagag
gaaggagttgcagagaatgaatatcagtacttagtttaa

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