KEGG   Pseudomonas mandelii: OU5_5917Help
Entry
OU5_5917          CDS       T03626                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pman  Pseudomonas mandelii
Pathway
pman03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pman00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OU5_5917
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pman03400]
    OU5_5917
Enzymes [BR:pman01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OU5_5917
DNA repair and recombination proteins [BR:pman03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OU5_5917
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AHZ72996
UniProt: A0A024EK67
LinkDB All DBs
Position
6523907..6526507
Genome map
AA seq 866 aa AA seqDB search
MNKSLDDYDRMRDFSATSEPAAKRSGKKTAKDHALQFCIQKHDASRLHYDFRLELDGALK
SWAVPKGPSLDPKVKRLAVHVEDHPIDYATFEGSIPEGHYGAGDVIVWDRGVWIPQEDPA
KAYAKGKLKFELQGEKLGGLWNLVRTHMPGKQEQWFLIKHQDSAAKPESDYDVVAAEPDS
VLSDRTIVPKKAKTAAKPKPVKKPARKVAAKQRSAQLTGAHKAKLPDQLKPELATPVEKA
PPGEWSYEIKFDGYRIMARIDHDEVKLFTRNGHDWTHKLPKQAEALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFESNRSGNILYYLFDMPYLNGVDLREVPVEERRVALATVLKPN
KDPLLRFSDAFGEEPEALLNSACQMQMEGLIGKRLGSPYVSRRSSDWIKLKCKHRQEFVV
VGFTDPKGARNAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKHIYEQLKPLQVKKPAV
VNPPTGFDAKGVHWLKPVLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAEDITEERAKAVK
AQTSRKSAADKPATATKKKTAKAAPAPSQVGLGDGKVRITHPDRVIDASSGTTKVQLAEY
YASVAEWILPELKDRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDKDVTGQPVMIIN
NAEALIGAVQMSTVELHTWNATTENLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVLDE
LGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSYMAKLLPERFSAVSGPKNRVG
RIFIDYLRNGLGATTICAYAARTREGLPVSVPIFREEVAELKGGNQWNIHNVQERLAEVG
DEPWADLKKTRQTITADMRRRVGMKK
NT seq 2601 nt NT seq  +upstreamnt  +downstreamnt
atgaacaagagtctggacgattacgaccgcatgcgcgatttttcggcgacctctgagccc
gccgcgaaacgttcaggcaagaaaactgcgaaagaccatgccttgcagttctgtatccag
aagcacgatgcctcgcggttgcactatgactttcgcctggaactcgatggcgcactgaaa
agctgggccgtgccgaaaggcccttcgctggaccccaaggtcaagcgcctggcagtccac
gttgaagaccatccgatcgattacgccacgttcgagggcagcattcccgaagggcattac
ggtgccggcgatgtgattgtctgggaccggggcgtgtggatcccccaggaagatccggcc
aaggcctatgccaaaggcaagctcaagttcgagctgcaaggcgagaaactcggcggcttg
tggaacctggttcgcacgcacatgccgggcaagcaggagcagtggtttctgatcaagcat
caggacagcgcggcgaaacccgagagtgattacgacgtggtcgccgccgaacccgacagc
gtgctcagtgaccgcaccattgtccccaaaaaggccaagaccgccgccaagcccaaaccg
gtgaagaagccggcgcgcaaggtcgcggctaaacagcggtcggcgcaactcaccggggct
cacaaggccaagctgcccgaccagctcaaaccggaattggcgacgccggtggaaaaagcc
ccgccgggcgagtggagctatgagatcaagttcgacggctaccggatcatggcgcgcatc
gaccacgacgaggtgaaactcttcacccgcaacggccacgactggacccacaaattgccg
aaacaggccgaggcgctggccgctctgggcctggagtccgcctggctcgacggtgagatg
gtggtggctaacgagcagggtgtgccggactttcaggcgctgcaaaatgcctttgaatcc
aatcgcagcggcaacatcctttattacctgttcgacatgccttacctcaatggcgtggac
ctgcgcgaggtgccggtcgaggagcggcgggtcgcgctggcaacggtgctcaaacccaat
aaagatcctttgctgcgcttctccgacgcgttcggcgaggagccggaagccttgctcaac
agtgcctgccaaatgcagatggaagggctgatcggcaagcgcctggggtcgccttatgtg
tcacggcgcagcagtgactggatcaagctcaagtgcaaacatcggcaggaattcgtcgtg
gtcgggttcaccgatcccaaaggtgcgcgcaatgccttcggcgcgctgctgttgggattg
catgaccgggacagtggcgagttgcgctacgctggcaaggtcggcaccggtttcaacgag
accacgctcaagcacatttatgaacagctcaaaccgttgcaggtaaaaaaaccggcggtg
gtcaatccgccgaccggtttcgacgccaagggtgtgcattggctcaaaccggtgttgctc
gccgaagtcgcgttcgccgagatgaccaaggacggatcggtgcgccatgccgtattccat
ggcttgcgcgatgacaagcccgccgaagacatcaccgaggagcgtgcgaaagccgtgaaa
gcccagaccagcaggaaatccgccgctgacaaaccggccaccgcgacgaaaaagaaaacg
gccaaggcagcgcccgcgccctcacaagtcggcctcggcgacggcaaagtgcgcatcacc
cacccggaccgggtgatcgatgcgagcagcggcaccaccaaagtgcagctggcggagtat
tacgccagcgtcgccgaatggattctgcccgagctcaaggatcggccggtggcgctggtg
cgcgccccggacgggatcgccggcgagctgttcttccagaaaaacgccgagcgcctggcc
attccgggcatcaccacgctggacaaggacgtcaccggccaaccggtgatgatcatcaac
aacgccgaagcgctgattggcgccgtgcagatgagcacggtggaactgcacacctggaac
gctaccacggagaatctcgacaaacctgaccgcttcgttctcgacctcgatccggacccg
gcgctgccgtggaaaagcatggtcgaggcgactcagctgacgctgtcggtgctggatgaa
ctggggctcaaggccttcctcaagaccagcggcggcaaggggattcacctggtggtgccg
ctgacccgaaagcacggttgggacgaggtgaaggacttcagccacgcaattgtcagctac
atggcgaagttgctgccggagcgcttttcggcggtgtcagggccgaagaatcgcgtcggg
cggatcttcatcgattacctgcgcaatggactgggtgccactaccatctgcgcctatgcc
gcccgcacccgcgaagggttgccggtgtcagtgccgatttttcgggaagaggtggcagag
ctcaagggcggtaatcagtggaatatccacaacgtgcaggaacgactggctgaagtgggt
gatgaaccttgggcggacttgaagaaaacccggcaaaccatcaccgccgacatgcgtcgg
cgggtcggaatgaaaaaatag

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