Prochlorococcus marinus MIT 9515: P9515_16631
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Entry
P9515_16631 CDS
T00465
Symbol
rpoC2
Name
(GenBank) RNA polymerase beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmc
Prochlorococcus marinus MIT 9515
Pathway
pmc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P9515_16631 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmc03021
]
P9515_16631 (rpoC2)
03400 DNA repair and recombination proteins [BR:
pmc03400
]
P9515_16631 (rpoC2)
Enzymes [BR:
pmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P9515_16631 (rpoC2)
Transcription machinery [BR:
pmc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P9515_16631 (rpoC2)
DNA repair and recombination proteins [BR:
pmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P9515_16631 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ABM72870
CyanoBase:
P9515_16631
UniProt:
A2BYK9
LinkDB
All DBs
Position
complement(1451371..1455471)
Genome browser
AA seq
1366 aa
AA seq
DB search
MTSSKPKKSSRVRKTSKNSKKNNKIIMPTLAKTPPSFKNKVVDKKALKNLVSWAYKTHGT
AVTAAMADNLKDLGFKYATQAAVSISVEDLKVPEAKQDLIGQAEAQITSTEECYRLGEIT
EVERHTKVIDTWTETNERLVDAVKNNFNQNDPLNSVWMMANSGARGNMSQVRQLVGMRGL
MANPQGEIIDLPIRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQD
VIVREEDCGTERSIVIEAEDGKFGSRLIGRLSAEDVLDSEDNLIIPKNTAIDPSLSKTIE
TSLISTVNIRSPLTCEANRSVCRKCYGWALAHNHLVDLGEAVGIIAAQSIGEPGTQLTMR
TFHTGGVSTAESGVVRSKIKGKVEFSSKAKIRGYRTPHGVEAKQAEVDFLLKIIPSGNNS
NKAQKIEVTSGSLLFVDDGQEIDSDITVAQITSGAVKKSVEKATKDVICDLAGQVRYDKV
LQPKEVTDRQGNITLKAQRLGRLWVLAGDVYNLPPNAKPVISTEKNVEQGTVLAEASQYS
EFGGEVRLRESVGDSREVQIVTTSMLLSNFNLIEESTHSGEIFHLESNDGTIYRLNTSPG
SKISSGEVIADLADERFRTKTGGLVKYAPGLSVKKARSSKNGFEVSQGGTLLWIPQETHE
INKDISLLMTEDMAWIEAGTEVVKDIFSQTSGIVTVTQKNDILREITVRNGSFHECEDEE
VLNRFTEEGQLVNPGEKIIDGVDNNEILFVQKLETSKSKGLLLRTVEEFNIPDEAELPEL
THVKQEKGPSLGLKAIQRLSYKDGELIKSVEGVELLKTHLSLESFDATPQMTIDVETIKD
KSNDSINRLNLVILESILVRRDTISDSSHGSTHTELQVKNNQQVKAGDVIATTQILCKEK
GIVQLPDLVENEPIRRLIVEREEDKIKINITGKALVKVGDRVVDGDSISEGEKATSCGEI
EEVSSKCVTLRLGRPYMVSPDSVLHVKDGDLVLRGDGLALLVFERQKTGDIVQGLPRIEE
LLEARRPRDSSTLCKRSGVVQIKEGNDDESVSLSVIERDDSINEYQLLIGQNIMVSDGQQ
VKGGELLTDGPINPHELLDCLFTDIKDQKPLMDAARESISKLQRRMVNEVQNVYKSQGVA
IDDKHIEVIVRQMTSKVRIEDAGDTTLLPGELIELRQVEDTNQAMSITGGAPAEFTPVLL
GITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSGFV
EELASEAGPHPDILAEESGGYRRAQNLRPDYTVDMPQSPTVSSTAILDDPSDEDLETTRN
RHGIDPSSSNFAAFARPNAENQFSEDQLPDPAALEGLQEEGLLSDE
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgacatcatctaaaccaaaaaaaagttcaagagtacgtaaaacttcaaaaaattcaaaa
aaaaataataaaataataatgcctacattggcaaaaactccaccttcattcaaaaataaa
gtagtagataaaaaagctttaaagaatttagtttcatgggcttataaaactcatggtaca
gctgtaacggcggcaatggctgataatttaaaagatttaggatttaaatatgctacacaa
gcagctgtttcgatatcagtagaggatctgaaagttcctgaagctaaacaagatttaatt
ggacaggcagaagctcaaattacatctactgaagagtgttacagacttggagaaattaca
gaagttgagagacatacaaaagttattgatacatggactgaaactaatgagagattagtt
gatgcagttaagaataatttcaatcaaaatgatccacttaactcagtttggatgatggct
aattctggggctagaggtaatatgtctcaggtaagacaacttgttgggatgagaggttta
atggctaatcctcaaggggagattattgatttacctatcagaacaaactttagggaagga
cttacagttactgaatatgtaatttcttcttatggcgctaggaaaggtttagtcgataca
gcattaagaaccgctgattcaggttatttgacaagaagattagttgatgttgcacaagat
gtaattgtcagagaagaggattgcggtacagaaagatcaattgtaatagaagctgaagac
ggtaaattcggatcaaggcttataggaagactttctgccgaagatgttttggactctgaa
gacaacttaattattccaaaaaacactgcaattgacccttctttatctaaaactatagag
acatcattaatctcaacagtaaatattagatctccattaacttgcgaggctaatcgttca
gtttgcagaaaatgttatggatgggctttagctcataatcatttagtcgatttaggagaa
gctgtagggattattgctgctcaatcaattggagaacctggaacccaattaaccatgaga
accttccatactggcggggtatctacagcagaaagtggagttgtaagatctaaaattaaa
ggtaaagttgaatttagttcaaaggcgaagatcagaggatatagaaccccgcatggagtt
gaagctaaacaagctgaagtagattttttactaaagataattccatcggggaataactct
aacaaagctcaaaaaattgaagtaacaagtggatctcttttatttgtagatgatggtcag
gaaattgattcagatataactgtcgcacaaattacttcaggagccgtaaagaaaagtgtc
gaaaaagccaccaaagatgttatttgtgatttagctggacaagtaaggtatgacaaagtc
cttcaaccaaaggaagttacagataggcaaggtaatatcactctaaaagctcaaagatta
ggcagactatgggttttggctggagacgtttataatttacctcccaatgctaaacctgtt
atttcaacagaaaaaaatgtagaacagggaactgttttagccgaggcgagccaatacagc
gagtttggtggagaagtgcgtttaagggaatcagtaggagattctcgagaagttcagatt
gtaacaacttcaatgctattaagtaattttaacttgattgaagaatccactcattctggg
gaaatatttcatttagagtctaatgatggaactatttatcgattaaatacttcacccggg
agcaaaattagtagcggtgaagtcattgctgatttagctgatgaaagatttagaactaaa
actggaggattggttaaatatgcacctggtttaagtgttaaaaaagcaagatcatctaaa
aatggtttcgaagttagtcaaggtggaacattgctttggattcctcaagagactcatgaa
ataaataaagatatatcattgcttatgacagaggatatggcatggatagaggcaggaaca
gaagtagttaaagatatatttagtcaaacctcagggattgtcacagtaactcaaaaaaat
gatattttgcgagaaattactgttagaaatggttcttttcatgagtgtgaagatgaagag
gttttaaatcgatttactgaagaaggacaattagttaatcctggtgagaaaattattgat
ggagtcgataataatgaaattctgtttgttcaaaaattagaaacatcaaaaagtaaaggt
ttactcttaagaactgtagaagaatttaatattcctgatgaggctgaattgccagaatta
acccatgtaaagcaggaaaaaggaccatcacttggattgaaagctattcaaaggctctct
tataaagatggtgaattaataaaatctgttgaaggtgtagaacttctaaaaacccatttg
agtttagaaagctttgatgctacaccccagatgaccattgatgttgagacaattaaagat
aaaagtaatgactcaataaatagattaaatttagttattttggaatcaattttggtgagg
agggataccatatccgattctagtcatggttcaacacatactgaattacaagtgaagaat
aatcagcaagttaaagctggagatgttattgctactactcaaattctttgtaaagagaaa
ggaatagttcaattacccgatctggttgagaacgaacccattagacgactaattgttgag
agagaagaagataaaataaaaattaatatcacaggtaaagcgcttgttaaagttggtgat
cgtgttgtggatggagattcaatcagtgaaggagaaaaagctacttcatgtggagaaata
gaagaagtttctagtaaatgtgtaaccttgcgacttggaagaccatatatggtttctcct
gattctgttttgcatgtaaaagatggagatttagttcttcgaggagatggcttagcatta
ctagtttttgaaagacagaaaacaggagatattgttcagggcttacctcgaattgaagaa
ttgttagaggcgaggagaccaagagattcatcaactttatgtaaaagatctggagttgta
caaatcaaagaaggaaatgatgatgaatcagtatctttatcagttatagaaagagatgat
tctattaacgagtatcaacttttaataggacaaaatattatggtaagtgatggccaacaa
gtgaaagggggagaattgttaacagatggtccaattaatcctcatgagttacttgattgt
ttatttacagatataaaagatcaaaaacctttaatggatgcagctagagaatcaatatca
aaattacaaagaaggatggtaaacgaggtccagaatgtttataagtctcagggagtagcg
attgatgataaacatatcgaagtgatagtaagacaaatgaccagtaaagttcgtattgaa
gatgcaggagatactactcttcttccaggggaattaatagaactaagacaagttgaagac
acaaatcaagcaatgtctattactggaggagcaccagcagagtttactcccgttttatta
ggtattactaaagcttcccttaatacagatagttttatttcagcagcatctttccaagaa
acaaccagagttcttactgaagctgccatcgaaggtaaatcagactggcttagaggttta
aaagagaatgtcattattggaagactcatccctgctggtacaggttttagtgggtttgtt
gaagaattagcttcagaagcagggcctcatcccgatattctcgcagaagaatctggtgga
tatagacgagcccagaatttaagaccagattatacagttgacatgcctcaatcccctaca
gtaagttctactgctattcttgatgatccaagtgatgaagatttagaaactactaggaat
agacatggaattgatccttcctcaagtaattttgctgcttttgcaaggcctaatgctgaa
aatcaattttctgaagaccaattacccgatccagcagctttggaagggttacaagaggag
ggacttctttctgatgaataa
DBGET
integrated database retrieval system