KEGG   Paraburkholderia megapolitana: FNZ07_00390
Entry
FNZ07_00390       CDS       T06515                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pmeg  Paraburkholderia megapolitana
Brite
KEGG Orthology (KO) [BR:pmeg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmeg03400]
    FNZ07_00390
Enzymes [BR:pmeg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     FNZ07_00390
    5.6.2.6  RNA 3'-5' helicase
     FNZ07_00390
DNA repair and recombination proteins [BR:pmeg03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    FNZ07_00390
SSDB
Motif
Pfam: DEAD_assoc DEAD Helicase_C Lhr_WH ResIII DprA_WH DUF5805 TrmB MarR AAA_22 MarR_2
Other DBs
NCBI-ProteinID: QDQ79753
LinkDB
Position
1:98387..102799
AA seq 1470 aa
MTSALPPASVLADFHPAVAGWFLKTFAAPTDAQVAAWPSIRSGRSTLVAAPTGSGKTLTA
FLSALDELVRDGLAHGGTLPDETLVVYVSPLKALSNDIRLNLQMPLEGIAAELAQRGLPA
LDIRTAVRTGDTSQQERTALRKRAPHILVTTPESLYVLLGSASGRRMLASTRTVIVDEIH
AIAGTKRGSHLALSLERLDALCGRRLPRIGLSATQKPIGLVARFLVGGASLDSDATPDCA
IVDVGHARKRDLALELPPVPLEAVMANEVWERVYDRLAELVAQHRTTLVFVNTRRMAERA
ARYLTERLGKDAVAAHHGSLAKELRFDAEQRLKRGELRVLIATASLELGIDIGDVDLVCQ
LGSPRAIAPFLQRVGRSGHQVGGMPKGRLFPNSRDDLLECAALLDCVRRGELDALQIPRA
PLDVLAQQIVAEVSNDEWREDALFDLIRNAAPYADLAREQYDTVLRMLAEGYTGRHGPRA
AYLHRDAVNGTLRGRRGGKLVAVTSGGTIPENADYAVLLEPQGVNIGTVNEDFAVESLAG
DVFQLGNASYRILRVETGRVRVVDAEGQPPNIPFWLGEAPGRSDELSFGVARLRAQIDML
LGSDGDEGTANNLNRAIAWLTDELSLSEPAARQIVEYLARARAALTVLPTQNTLVIERFF
DESGGTQLVIHAPFGSRLNRAWGLALRKRFCRTFNFELQAAATEDAIILSLTGSHSFALD
EVWRYLHSNTAQHILIQALLDAPLFGVRWRWNATTALALPRYTGGRKTAPQLQRMRSEDL
LATVFPDQVACLENIVGERELPVHPLVDQTIDDCLHEAMDTDGWLRLLHRIERGEVALVT
RELPAPSPLAAEILSAKPYAFLDDAPIEERRTQAVLNRRWTDPESADDLGALDADAIASV
CDEAWPQARDADEMHEALTGLACITDAEADAEAQRNDGWPQWLDALAKAGRATRMQIAQQ
DTLWVAAERLACLRAIYPVALIEPVIEPPKGYTDPWTEDDAIVDVVRARLTGFGPLTVPA
IARPLALPASVVALALTRLESEGYVMRGRFTPDTREEEWCERHLLARIHRYTVRRLRREI
EPVERHDFMRFLFEWQHVSPSTRGEGRDALAAILDQLEGFQAAAGAWEDDILPARLKDYS
ITSLDELCRSGKIVWTRLTERARATAGPVRSTPIVLLPRREVTVWSALLDQSKPADLSPR
AQHVHDALARHGAMFFDELLADVHGLRIELENALGELVAAGLVNSDSFAGLRALLKPVAK
RNAYYGSRRGRVGALIGGMDDAGRWALLRRPVTDSTANADATADTTAAATTNPRTPRIAP
DVLEHIAMALLRRYGVVFWRLLEREADWLPPWRDLLRVLQRLEARGQVRGGRFVNGPSGE
QFALPEAIPLLREMRHHANDGLYVCVAATDPLNLLGTMLPGDKVPAVAGNRVLFRDGVPV
ATLVGAEFIWLHDPDSAAKSEMRTMLTRRY
NT seq 4413 nt   +upstreamnt  +downstreamnt
atgacttccgcgctgcctccagccagcgtactcgccgattttcatccggcggtcgctggc
tggtttctcaagacgttcgcggcgccgaccgatgcgcaggtcgcggcgtggccgtcgatc
cgcagcggccgctcgacgctggtcgcggcacctacgggttccggcaagacgttgaccgcg
tttctgtcggcactcgacgagctggtccgcgacggtctcgcgcacggcggcacgttgccc
gacgaaacgctggtggtgtatgtgtcgccgctcaaggcgctatcgaacgacatccgtttg
aacctgcagatgccgctcgaaggcatcgccgccgaactcgcgcaacgtgggctaccggca
ctcgacatccgcaccgccgtgcgcaccggcgacacatcgcagcaggagcgcaccgctctg
cgcaaacgcgcaccgcacatcctcgtgacgacgcccgaatcgctctacgtgctgctcggt
tccgcgtcggggcgtcgtatgctcgcgagcacgcgcacggtgatcgtcgatgaaatccac
gcgattgcgggcaccaaacgcggtagccatctcgcgctcagtctcgaacggctcgatgcg
ctgtgcggccggcgcctgccgcgcatcggcctgtcggccacgcaaaaaccgatcggcctc
gtagcgcggtttctggtcggcggcgcgagtctcgacagcgacgcgacgcccgattgcgcc
atcgtcgacgtcggtcatgcgcgcaaacgcgatctcgcactcgaactgccgccggtcccg
ctcgaagcggtgatggccaacgaggtatgggagcgcgtctacgaccggctcgccgaactc
gtggcgcagcatcgcacgacgctcgtcttcgtcaacacgcggcgcatggccgaacgtgcc
gcgcggtatctgaccgaacgtctcggcaaggatgcggtagctgcccatcacggcagcctc
gccaaagagctgcgcttcgacgcagaacaacgtttgaaacgcggcgagttgcgcgtgttg
atcgcgacggcttcgctggagctcggcatcgatatcggcgacgtcgatctcgtctgccag
cttggttcgccgcgcgccatcgcgccgtttctgcaacgcgtcgggcgctcggggcaccag
gtcggcgggatgccgaaagggcgactctttcctaactcgcgcgacgatctgctcgaatgt
gcggcgctgctcgattgcgtgcggcgcggcgaactcgacgccttgcagattccgcgcgcg
ccgctcgatgtgctcgcgcagcagatcgtcgccgaagtgtcgaatgacgagtggcgtgag
gatgcgctattcgatctcattcgcaacgccgcgccgtatgcggacctcgcgcgcgagcag
tacgataccgtgctgcgcatgctcgccgaagggtatacgggccgccatgggccgcgtgcc
gcctatctgcatcgcgacgccgtgaacggcacgctgcgcgggcggcgcggcggcaagctg
gttgccgtaacatcgggcggcacgatacctgagaacgccgactacgcggtgctgctcgaa
ccgcagggcgtgaacatcggcacggtcaacgaagacttcgcggtggaaagtctcgccggc
gacgtgttccaactcggcaacgcgtcgtaccggatcctgcgcgtcgagaccggccgggtg
cgcgtcgtcgatgcggaaggacagccgccgaatattccgttctggcttggtgaagcaccg
ggtcgcagcgacgaactgtcgttcggcgttgcgcggctgcgtgcgcagatcgatatgcta
ctcggcagcgacggagacgagggcactgcgaataacctcaatcgcgcgatcgcctggctc
acagacgagctaagcctgtccgaacccgccgcccgccagatcgtcgaatacctcgcccgt
gcccgcgccgccctcaccgtgttgccgacgcagaacacgctcgtgatagagcgcttcttc
gacgagtcgggcggcacacagcttgtcattcacgcgccgttcggcagccggctcaatcgc
gcgtggggtctcgcgctgcgcaagcgcttttgccgcacgttcaacttcgaactgcaggcc
gcggccaccgaagacgcgatcatcctctcgctgaccggcagtcacagcttcgccctcgac
gaagtgtggcgctatctgcattcgaataccgcgcaacacatcctgattcaggcgctgctc
gacgcaccgctcttcggcgtgcgctggcgctggaatgccacgaccgcgctcgcgctgccg
cgctacaccggcggccgcaaaacggcaccgcagctgcagcgtatgcgtagcgaagatctg
cttgcgacggtgtttccggatcaggtggcgtgcctcgagaacatcgtcggcgagcgcgag
ttgccggttcatccgctcgtcgatcaaaccatcgacgactgcctgcacgaagcgatggat
accgacggctggctgcgtctgctgcaccgtatcgagcgcggcgaagtcgcgctcgtcaca
cgcgaactgcccgcgccgtcgccgctcgccgcggagattctcagcgcgaagccgtatgcg
ttcctcgacgacgcaccgatagaggaacgccgcacgcaagcggtactgaaccgccgctgg
accgatccggaatcagccgacgatctcggcgcactcgatgccgatgcgatcgcaagcgta
tgcgacgaggcatggccgcaagcacgcgatgccgatgaaatgcacgaagcgctgaccggt
ctagcctgcataacagacgcagaagccgatgccgaagcgcagcgcaacgacggctggccg
caatggctcgacgcgctggcaaaagcgggccgcgcgacgcgcatgcagatcgcgcagcag
gacacgctctgggtcgcggccgaacgcctcgcgtgtttgcgggcgatctacccggtcgcg
ctcatcgagcccgttatcgagccgccgaaaggctacaccgacccgtggaccgaagacgat
gcgatcgtcgacgtcgtgcgcgcgaggctcactggcttcggtccgctcaccgtgcccgcc
atcgcgcgaccgttggcgctgcctgcatccgtggtcgcgctcgcgctgacgcgcctcgaa
tcggaaggctacgtgatgcgtggccgcttcacacccgacacacgcgaagaagaatggtgc
gagcgccatctgctggcacgcattcatcgctacacggtgcgccggctgcggcgcgaaatc
gaaccggtcgaacgacacgacttcatgcgcttcctgttcgaatggcagcacgtgagcccg
tccacacgcggcgaaggccgcgacgcgctcgccgcgatactcgaccagctcgaaggcttt
caggcagcggcgggcgcgtgggaagacgacatcctgcccgcgcgtctgaaggactattcg
atcacctcgctcgacgaactgtgccgctccggcaagatcgtctggacgcggctcaccgaa
cgcgcgcgtgcgaccgccgggccggtgcgcagcacgccgatcgtgctcttgccacgccgc
gaagtgaccgtgtggagcgcactgctcgaccagtcgaaacccgccgatctctcgccgcgc
gcgcagcacgtgcacgatgcgctggcacgacacggcgcgatgttcttcgacgaactgctg
gccgacgtgcacgggctgcgcatcgaactcgaaaacgcgctcggcgaactggtcgcagcc
ggcctcgtgaactcggacagcttcgcgggattgcgggcgctgctcaagccggtggccaaa
cgcaatgcgtactacggcagccggcgcggccgggtcggcgcgctgattggcggaatggac
gacgcgggacgctgggcgctgctgcgacggcccgtgaccgactcaaccgcaaacgcggac
gcaacagcagacaccaccgctgcggcaacgacgaaccctcgcactccgcggatcgcgccc
gacgtgctcgaacacatcgcgatggcgctgctgcgccgctacggcgtcgtgttctggcgg
ctactcgaacgcgaagcggactggttgccgccgtggcgcgatctgctgcgtgtgttgcaa
cggctcgaagcacgcggccaggtgcgcggcggccgcttcgtcaacggcccgtcgggcgaa
cagttcgcgttgcccgaagcgattccactgctgcgcgagatgcgccatcacgcgaacgac
ggactctacgtgtgtgtcgccgcgaccgatccattgaatctgctcggcacgatgctgccc
ggcgacaaggtgccggccgtcgccggcaaccgggtgctgtttcgcgacggcgtgccggtc
gcgactttggtcggcgccgaattcatctggctgcacgatccggacagcgccgcgaagagc
gagatgcgtacgatgttgacgcgacgttactga

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