Prochlorococcus marinus MIT 9301: P9301_16761
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Entry
P9301_16761 CDS
T00488
Symbol
rpoB
Name
(GenBank) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pmg
Prochlorococcus marinus MIT 9301
Pathway
pmg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P9301_16761 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmg03021
]
P9301_16761 (rpoB)
03400 DNA repair and recombination proteins [BR:
pmg03400
]
P9301_16761 (rpoB)
Enzymes [BR:
pmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P9301_16761 (rpoB)
Transcription machinery [BR:
pmg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P9301_16761 (rpoB)
DNA repair and recombination proteins [BR:
pmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P9301_16761 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ABO18299
UniProt:
A3PEX4
LinkDB
All DBs
Position
complement(1405972..1409265)
Genome browser
AA seq
1097 aa
AA seq
DB search
MSSSALQVAKTATYLPDLVEVQRASFKWFLEKGLIEELQNFSPISDYTGKLELHFIGEEY
RLKRPRHDVEEAKRRDATFASQMYVTCRLINKETGEIKEQEVFIGELPLMTERGTFIING
AERVIVNQIVRSPGVYFKDELDKNGRRTYNASVIPNRGAWLKFETDKNNLLYVRVDKTRK
INAHVLMRAMGLSDNDVVDKLRHPEFYQSSIESANDEGINSEDQALLELYKKLRPGEPPS
VSGGQQLLHSRFFDPKRYDLGRVGRYKINKKLRLTVPDNVRTLTHEDVLSTIDYLINLEL
DIGGASLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETDSLTPAQLVNP
KPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHY
GRLCPIETPEGPNAGLINSLATHARVNEYGFIETPFWEVKNGKVDKEGNPVYLSADLEDE
CRVAPGDVATDKDGNIIANLIPVRYRQDFEKVPPHQVDYVQLSPVQVISVATSLIPFLEH
DDANRALMGSNMQRQAVPLLRPERPLVGTGLESQVARDSGMVPITKVNGTVSYVDANEIV
VKDEDGNEHFHYLQKYQRSNQDTCLNQRPIVKIGDRVISGQVLADGSACEGGEIALGQNV
LIAYMPWEGYNYEDAILVSERMVTDDLYTSVHIEKYEIEARQTKLGPEEITREIPNISEE
SLNNLDEMGIIRIGAFVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRV
PKTEKGRVLDVRIYTREQGDELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRIL
PREDMPYLPDGTPVDIVLNPLGVPSRMNVGQVFELLMGWAAANLNCRVKVVPFDEMYGAE
KSHQTVQAFLEEASKQPGKAWVYNPDDPGKLLLKDGRTGEPFDQPVAVGYSHFLKLVHLV
DDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALEAYGAAYTLQELLTVKSDDMQ
GRNEALNAIVKGKPIPRPGTPESFKVLMRELQSLGLDIGVYTDEGKEVDLMQDINPRRNT
PSRPTYESLGTSEYEED
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtagcgctttacaggtagcaaaaacagctacttatctaccagatttagttgaa
gtacaaagagcaagctttaaatggtttttggaaaagggtttaatagaagaattacaaaat
ttttctccaatttctgattacacaggtaaattagaattacatttcatcggtgaagagtac
aggttaaaaagacctagacatgatgttgaggaagctaaaagaagagatgctacatttgca
tctcaaatgtatgtaacttgcaggttaattaataaagagacaggggaaattaaagaacaa
gaagtatttattggcgaactaccattaatgactgaaagaggaactttcattattaatggt
gctgaaagagttattgttaatcaaattgttcgaagtcccggtgtatatttcaaagatgaa
cttgataaaaatggtcgaaggacctacaacgctagcgttattcctaatagaggtgcttgg
ttaaaattcgaaactgacaaaaataatttactttatgtgagagttgacaaaactagaaaa
attaatgctcatgttcttatgagagcgatgggcctttcagataatgatgtggtcgataaa
ctaaggcatcctgagttttatcaaagctccattgagtcagctaatgacgagggtataaat
tcagaagaccaggcattacttgagctatacaagaagctacgtcctggtgaacctccctct
gtttcaggcggacaacaactgttacacagtaggtttttcgatccaaaaagatatgattta
ggacgagttggtagatataaaataaacaaaaaattgagactaaccgtaccagacaatgtg
agaacacttacccatgaagatgtcctctctaccattgattatttaattaatctagaattg
gacattggcggcgctagtttagatgatatcgatcaccttggtaatcggagggttagatct
gtaggagaacttttacaaaatcaagtcagggttggactcaatcgcttagagagaattatt
aaagagagaatgactgtaggagagacagattctttaactcctgctcaactagtaaatccc
aaacctttagttgctgctataaaggaattttttggatccagtcaattaagccagttcatg
gatcaaactaatcctctggctgaattaacacacaagagaagaatttcagcattaggtcca
ggtggtttaactagagaaagagcaggctttgcagtaagagatatacacccttcgcattat
ggaagattatgtcctatcgagactcccgaaggtcctaatgcaggacttataaattcttta
gctacccatgcaagagttaatgaatatggtttcattgaaacacctttttgggaagtcaaa
aacggtaaagtggataaagaaggtaatcctgtttatctttctgctgatttagaagatgag
tgtagggtggctccaggagacgtcgcaactgacaaggacggaaacataattgcaaatcta
ataccagtaagatatcgacaagattttgaaaaagttccacctcatcaagttgattacgtt
cagctttctccggttcaggtgatttcagttgctacttcacttattcctttcttggaacat
gatgatgctaatagagctctaatgggatcaaatatgcaacgccaagccgttccactgctc
aggccagaacgtcctttagttggtacaggtttagaatctcaagttgctagagattccggg
atggttcccatcacaaaagttaatggaactgtatcttacgtagatgctaatgagattgtc
gtcaaagatgaggatggtaatgaacattttcactatctacagaaatatcaaagatcaaat
caagatacttgcctcaaccaaagacctatagtgaaaattggagatagagttatatctggt
caagttttagcagatggatctgcatgtgaaggaggggaaattgcccttggccaaaacgtt
ttaattgcttatatgccatgggaggggtacaactacgaggatgcaattcttgtgagtgag
aggatggttactgatgatttatatacttcagtgcatattgaaaaatatgaaattgaagca
agacaaacgaagttagggcctgaagagataacgagagagattcctaatatttcggaagaa
agcttgaataatcttgatgagatgggaattattaggattggtgcttttgtagagagtgga
gatatccttgtaggaaaagtgactccaaaaggggaatcagaccaaccaccggaagaaaaa
ctgttaagagccattttcggtgaaaaagctagagatgtgagagacaattccctcagagta
cctaaaactgaaaagggaagggttttggatgttcgtatttatacaagagaacaaggtgat
gaattacctccaggagccaatatggttgtgagggtttatgttgcccagagaagaaaaatt
caagtaggtgacaaaatggccgggaggcatggaaataaaggaattattagcagaatctta
ccaagagaagatatgccttatttacctgatggaacccctgtagatatagtgcttaatcct
ttaggagttccaagtaggatgaatgttggtcaagtttttgaattacttatgggctgggca
gctgccaatttaaattgccgggttaaagtcgttccatttgatgaaatgtatggagctgaa
aagtcacatcaaactgttcaagcatttttagaggaagcttcaaaacaaccaggtaaagct
tgggtttacaatcctgatgaccctggaaagttattacttaaagatggtaggacaggggaa
cctttcgatcagccagttgctgttggatactctcacttcctcaagttagttcatttagtg
gatgataaaattcatgctagatctactgggccttactctttagttacacagcaaccattg
ggtggtaaagctcagcaaggtggacaaaggcttggagaaatggaagtatgggctcttgaa
gcttatggagccgcttacacactgcaagaattgttaacagttaaatctgacgatatgcaa
ggaagaaatgaagcgcttaatgcaatcgtaaaaggtaaaccgatcccaaggcctggtact
cctgaatcatttaaagttcttatgagggaattacaatctctagggttggatataggagtt
tatacagatgaaggaaaagaagtagatctaatgcaagatataaacccgagaagaaatact
ccatcaagacctacttacgaatctctcggaacctcagaatatgaggaagattaa
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