Prochlorococcus marinus MIT 9215: P9215_17691
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Entry
P9215_17691 CDS
T00598
Symbol
rne
Name
(GenBank) Ribonuclease G and E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmh
Prochlorococcus marinus MIT 9215
Pathway
pmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9215_17691 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmh03019
]
P9215_17691 (rne)
03009 Ribosome biogenesis [BR:
pmh03009
]
P9215_17691 (rne)
Enzymes [BR:
pmh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P9215_17691 (rne)
Messenger RNA biogenesis [BR:
pmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P9215_17691 (rne)
Ribosome biogenesis [BR:
pmh03009
]
Prokaryotic type
rRNA processing factors
P9215_17691 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ABV51382
CyanoBase:
P9215_17691
UniProt:
A8G701
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All DBs
Position
1517871..1519691
Genome browser
AA seq
606 aa
AA seq
DB search
MSQQIIIAEQARIAALLTDDRVDELIVAQGQYQIGDIFLGTVENVLPGIDAAFINIGESE
KNGFIHVSDLGPLRLKKGTFGITELLEPKQKVLVQVIKEPTGSKGPRLTGSISIPGKYLV
LQPYGQGVNISRKINTETERSRLKALGVLIKPASTGLLFRTEAEKIKEELLIEDLEHLIQ
QWENVLKVSEVSNPPNLVKRDDDFSLKILRDHIKASTKSIIIDSKLSVARAKDFLINCES
DIDITFHDNSLNQHIFEKYEIKKTIQKALQPRVDLPSGGYIIIEPTEALTVIDVNSGSFT
RSANSRQTVLWTNCEAAVEISRQMKLRNIGGVIVVDFIDMESRRDQFQLLEHFTSAIKDD
FARPQIAQLTELGLVELTRKRQGQNIYELFGKKSSKCDDTEHIENILNQEISNLKIKNVE
NKSNQSNDLKSIDIDASQSTDEQEKIMDKELLNFKDLSKENSSYKKENDNDNLIQSNLKE
KNIITVDLTNEEKIVFSQLGINPLIKLGKEYLTSNNFVRLKDSNKEKEKTLDNKKTKSKQ
IKKTSKPGEEKIQLKIEAKANSKDKSTNKINESNEVIFSDKKDEIELSDVLTNARKKRRR
SSASIE
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagcaaattatcatcgctgagcaggctcgaattgcagctttactcacagatgat
cgagttgatgaattaatcgtcgcacaaggtcaatatcaaattggcgatatttttttagga
acagttgaaaatgttctccctggcattgatgcagctttcataaatattggtgaaagtgaa
aaaaatggattcattcatgtctcggatttaggtccactaagactcaaaaaagggacattt
ggaataactgaattattagaaccaaaacaaaaagtgcttgtacaggtaataaaagaaccc
acaggatctaaagggcctagactaacagggagtatttctatcccagggaaatacttagtt
ctacaaccatatggccaaggagtaaatatttcaagaaaaataaatacagaaacagaacga
agccgtttgaaagctcttggggtcttaataaaaccggctagcacaggcttattatttaga
acagaggctgaaaagataaaagaagaacttctaattgaagatttagaacatttaattcaa
caatgggaaaatgtactaaaagtttctgaggtttctaatcctccaaatttagtaaaaaga
gatgatgatttctcccttaagatcttaagagatcatattaaagcgtcaactaaaagcata
attatcgatagtaaattatcagttgcaagggcaaaagattttttaataaattgtgaatct
gatatagatattacatttcacgataacagtctaaaccaacatattttcgagaagtacgaa
attaaaaaaacaattcaaaaagctctccagcccagagttgatctaccttctggaggttac
ataattattgaacctactgaagctttaacagttatcgatgtaaactctggatcatttaca
agatccgccaactcaagacaaaccgttttatggacaaactgcgaagcagccgttgaaatc
tcaagacaaatgaagttaagaaacattggtggagttatagtagtagattttattgatatg
gaatctagaagagatcaatttcagttacttgagcattttacctctgcaattaaagatgat
tttgctaggcctcaaatagctcagcttactgaattagggttagtagagttaacgagaaaa
agacaaggtcaaaatatatatgaattattcggtaaaaaatcttctaaatgcgatgataca
gaacatatagaaaatatattaaatcaagaaatttctaacctaaaaattaaaaatgttgaa
aataaatctaatcagtcaaacgatctaaaatctatagatatagatgcttctcaatcaact
gatgagcaagaaaaaataatggacaaggaattacttaatttcaaagatctaagtaaagaa
aattcttcttataaaaaagaaaatgataatgataacttaatccaatcaaatttaaaagaa
aaaaatataataacggttgatcttactaatgaagaaaaaattgttttcagtcaattaggt
attaatccacttataaagttaggcaaagaatatctcactagcaataattttgtgcgttta
aaagacagcaataaggaaaaggaaaaaaccttagataataaaaaaacaaaatcaaaacaa
attaaaaaaacctcaaaacctggagaagaaaagattcaacttaaaattgaagcaaaagca
aattctaaagacaaatcaacaaataaaatcaatgaaagtaatgaagttatattttcagat
aaaaaagatgaaattgaactttcagatgtgctaaccaatgcaagaaaaaaaagaagaaga
tcttcagcaagcattgaataa
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